Evidence map›Paper›PMID 36322418›Full record

ArticleActa crystallographica. Section D, Structural biology2022

Zymogenic latency in an ∼250-million-year-old astacin metallopeptidase.

Tibisay Guevara, Arturo Rodríguez-Banqueri, Walter Stöcker, Christoph Becker-Pauly, F Xavier Gomis-Rüth

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Tibisay GuevaraProteolysis Laboratory, Department of Structural Biology, Molecular Biology Institute of Barcelona (IBMB), Higher Scientific Research Council (CSIC), Barcelona Science Park, Baldiri Reixac 15-21, Helix Building, 08028 Barcelona, Catalonia, Spain.
Arturo Rodríguez-BanqueriProteolysis Laboratory, Department of Structural Biology, Molecular Biology Institute of Barcelona (IBMB), Higher Scientific Research Council (CSIC), Barcelona Science Park, Baldiri Reixac 15-21, Helix Building, 08028 Barcelona, Catalonia, Spain.ORCID 0000-0001-6183-0639
Walter StöckerInstitut für Molekulare Physiologie (IMP), Johannes-Gutenberg Universität Mainz (JGU), Johann-Joachim-Becher-Weg 7, 55128 Mainz, Germany.ORCID 0000-0002-1515-6994
Christoph Becker-PaulyBiochemical Institute, Christian-Albrechts-Universität zu Kiel, Otto-Hahn-Platz 9, 24118 Kiel, Germany.
F Xavier Gomis-RüthProteolysis Laboratory, Department of Structural Biology, Molecular Biology Institute of Barcelona (IBMB), Higher Scientific Research Council (CSIC), Barcelona Science Park, Baldiri Reixac 15-21, Helix Building, 08028 Barcelona, Catalonia, Spain.
Institut de Biologia Molecular de Barcelona · ESChristian-Albrechts-Universität zu Kiel · DEJohannes Gutenberg University Mainz · DE

Funding

Deutsche Forschungsgemeinschaft SFB877Fundació la Marató de TV3 201815Generalitat de Catalunya 2017SGR3Ministerio de Ciencia e Innovación PID2019-107725RG-I00
6 · The paper itself

Abstract

The horseshoe crab Limulus polyphemus is one of few extant Limulus species, which date back to ∼250 million years ago under the conservation of a common Bauplan documented by fossil records. It possesses the only proteolytic blood-coagulation and innate immunity system outside vertebrates and is a model organism for the study of the evolution and function of peptidases. The astacins are a family of metallopeptidases that share a central ∼200-residue catalytic domain (CD), which is found in >1000 species across holozoans and, sporadically, bacteria. Here, the zymogen of an astacin from L. polyphemus was crystallized and its structure was solved. A 34-residue, mostly unstructured pro-peptide (PP) traverses, and thus blocks, the active-site cleft of the CD in the opposite direction to a substrate. A central `PP motif' (F

Indexed as

Aspartic AcidMetalloproteasesAnimalsCatalytic DomainEnzyme PrecursorsHumansMetalloendopeptidasesPeptide HydrolasesAspartic AcidastacinEnzyme PrecursorsMetalloendopeptidasesMetalloproteasesPeptide Hydrolasesaspartate-switch mechanismastacin metallopeptidasecatalytic domainhorseshoe crabLimulus polyphemusmetallopeptidase zymogenic latencypro-peptide

Identifiers

PMID36322418
PMCPMC9629494
OpenAlexW4306923181

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.