Evidence map›Paper›PMID 36321901›Full record

ArticleMicrobiology spectrum2022

A Catalog of over 5,000 Metagenome-Assembled Microbial Genomes from the Caprinae Gut Microbiota.

Xiao-Xuan Zhang, Qing-Bo Lv, Qiu-Long Yan, Yue Zhang, Ruo-Chun Guo, Jin-Xin Meng, He Ma, Si-Yuan Qin, Qing-He Zhu, Chun-Qiu Li and 5 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Xiao-Xuan Zhang *College of Veterinary Medicine, Qingdao Agricultural Universitygrid.412608.9, Qingdao, Shandong Province, China.ORCID 0000-0002-9470-2892
Qing-Bo Lv *College of Veterinary Medicine, Qingdao Agricultural Universitygrid.412608.9, Qingdao, Shandong Province, China.
Qiu-Long Yan *Department of Microbiology, College of Basic Medical Sciences, Dalian Medical University, Dalian, Liaoning Province, China.ORCID 0000-0002-2697-4562
Yue ZhangPuensum Genetech Institute, Wuhan, Hubei Province, China.
Ruo-Chun GuoPuensum Genetech Institute, Wuhan, Hubei Province, China.
Jin-Xin MengCollege of Veterinary Medicine, Qingdao Agricultural Universitygrid.412608.9, Qingdao, Shandong Province, China.
He MaCollege of Veterinary Medicine, Qingdao Agricultural Universitygrid.412608.9, Qingdao, Shandong Province, China.
Si-Yuan QinKey Laboratory of Zoonosis Research, Ministry of Education, College of Veterinary Medicine, Jilin University, Changchun, Jilin Province, China.
Qing-He ZhuHeilongjiang Provincial Key Laboratory of the Prevention and Control of Bovine Diseases, College of Animal Science, Heilongjiang Bayi Agriculture University, Daqing, Heilongjiang Province, China.
Chun-Qiu LiHeilongjiang Provincial Key Laboratory of the Prevention and Control of Bovine Diseases, College of Animal Science, Heilongjiang Bayi Agriculture University, Daqing, Heilongjiang Province, China.
Rui LiuCollege of Veterinary Medicine, Qingdao Agricultural Universitygrid.412608.9, Qingdao, Shandong Province, China.
Gang LiuCollege of Veterinary Medicine, Qingdao Agricultural Universitygrid.412608.9, Qingdao, Shandong Province, China.
Sheng-Hui LiPuensum Genetech Institute, Wuhan, Hubei Province, China.
Dong-Bo SunHeilongjiang Provincial Key Laboratory of the Prevention and Control of Bovine Diseases, College of Animal Science, Heilongjiang Bayi Agriculture University, Daqing, Heilongjiang Province, China.ORCID 0000-0003-3144-3763
Hong-Bo NiCollege of Veterinary Medicine, Qingdao Agricultural Universitygrid.412608.9, Qingdao, Shandong Province, China.ORCID 0000-0001-9993-3190
Qingdao Agricultural University · CNHeilongjiang Bayi Agricultural University · CNWuhan Institute of Bioengineering · CNDalian Medical University · CNJilin University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most microbiome studies regarding the ruminant digestive tract have focused on the rumen microbiota, whereas only a few studies were performed on investigating the gut microbiota of ruminants, which limits our understanding of this important component. Herein, the gut microbiota of 30 Caprinae animals (sheep and goats) from six provinces in China was characterized using ultradeep (>100 Gbp per sample) metagenome shotgun sequencing. An inventory of Caprinae gut microbial species containing 5,046 metagenomic assembly genomes (MAGs) was constructed. Particularly, 2,530 of the genomes belonged to uncultured candidate species. These genomes largely expanded the genomic repository of the current microbes in the Caprinae gut. Several enzymes and biosynthetic gene clusters encoded by these Caprinae gut species were identified. In summary, our study extends the gut microbiota characteristics of Caprinae and provides a basis for future studies on animal production and animal health.

Indexed as

Gastrointestinal MicrobiomeMetagenomeAnimalsBacteriaGenome, BacterialGenome, MicrobialMetagenomicsRuminantsSheepCaprinaegut microbiotametagenome-assembled genomesmicrobial function

Identifiers

PMID36321901
PMCPMC9769736
OpenAlexW4307970354

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.