Evidence map›Paper›PMID 36321693›Full record

ArticleBiological research for nursing2023

DNA Methylation Changes in Autologous Hematopoietic Stem Cell Transplant Patients.

Lathika Mohanraj, Hope Wolf, Scott Silvey, Jinze Liu, Amir Toor, Theresa Swift-Scanlan

Open access · greenAbstract read
In one paragraph

Article in Biological research for nursing, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Determining the relationship of p16Journal of cancer survivorship : research and practice · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lathika MohanrajDepartment of Adult Health and Nursing Systems, 16197VCU School of Nursing, Richmond, VA, USA.ORCID 0000-0002-5504-1518
Hope WolfDepartment of Human and Molecular Genetics, 6886VCU School of Medicine, Richmond, VA, USA.
Scott SilveyDepartment of Biostatistics, 6886VCU School of Medicine, Richmond, VA, USA.
Jinze LiuDepartment of Biostatistics, 6886VCU School of Medicine, Richmond, VA, USA.
Amir ToorDepartment of Internal Medicine, 6886VCU School of Medicine, Richmond, VA, USA.
Theresa Swift-ScanlanEndowed Professor and Director, Biobehavioral Research Lab, VCU School of Nursing, Richmond, VA, USA.
Children's Hospital of Richmond at VCU · US

Funding

Virus Vector Shared ResourceP30CA016059 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Keri R Maher · 1985 to 2026
$51.0M
Research Supplement to Promote Diversity in Health Related ResearchUL1TR002649 · NCATS · VIRGINIA COMMONWEALTH UNIVERSITY · PI MOELLER, FREDERICK GERARD · 2018 to 2022
$19.1M
NCATS NIH HHS UL1 TR002649NCI NIH HHS P30 CA016059
6 · The paper itself

Abstract

backgroundBlood cancers may be potentially cured with hematopoietic stem cell transplantation (HCT); however, standard pre-assessments for transplant eligibility do not capture all contributing factors for transplant outcomes. Epigenetic biomarkers predict outcomes in various diseases. This pilot study aims to explore epigenetic changes (epigenetic age and differentially methylated genes) in patients before and after autologous HCT, that can serve as potential biomarkers to better predict HCT outcomes.

methodsThis study used a prospective longitudinal study design to compare genome wide DNA methylation changes in 36 autologous HCT eligible patients recruited from the Cellular Immunotherapies and Transplant clinic at a designated National Cancer Center.

resultsGenome-wide DNA methylation, measured by the Illumina Infinium Human Methylation 850K BeadChip, showed a significant difference in DNA methylation patterns post-HCT compared to pre-HCT. Compared to baseline levels of DNA methylation pre-HCT, 3358 CpG sites were hypo-methylated and 3687 were hyper-methylated. Identified differentially methylated positions overlapped with genes involved in hematopoiesis, blood cancers, inflammation and immune responses. Enrichment analyses showed significant alterations in biological processes such as immune response and cell structure organization, however no significant pathways were noted. Though participants had an advanced epigenetic age compared to chronologic age before and after HCT, both epigenetic age and accelerated age decreased post-HCT.

conclusionEpigenetic changes, both in epigenetic age and differentially methylated genes were observed in autologous HCT recipients, and should be explored as biomarkers to predict transplant outcomes after autologous HCT in larger, longitudinal studies.

Indexed as

Hematologic NeoplasmsHematopoietic Stem Cell TransplantationDNA MethylationHumansLongitudinal StudiesPilot ProjectsProspective Studiesbiomarkersdifferentially methylated genesepigenetic agehematopoietic stem cell transplantoutcomes

Identifiers

PMID36321693
PMCPMC10236442
OpenAlexW4307967635

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.