Evidence map›Paper›PMID 36318584›Full record

ArticlePLoS pathogens2022

RNase L activation in the cytoplasm induces aberrant processing of mRNAs in the nucleus.

James M Burke, Nina Ripin, Max B Ferretti, Laura A St Clair, Emma R Worden-Sapper, Fernando Salgado, Sara L Sawyer, Rushika Perera, Kristen W Lynch, Roy Parker

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 44 citations in OpenAlex.

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  12. Nonsense-mediated decay controls a negative feedback loop in innate immune sensing.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  19. Viral Modulation of Host Splicing.Annual review of virology · 2025
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

James M BurkeDepartment of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.
Nina RipinDepartment of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.
Max B FerrettiDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Laura A St ClairCenter for Vector-Borne Infectious Diseases, Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, United States of America.
Emma R Worden-SapperDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Fernando SalgadoDepartment of Molecular Medicine, University of Florida Scripps Biomedical Research, Jupiter, Florida, United States of America.
Sara L SawyerDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Rushika PereraCenter for Vector-Borne Infectious Diseases, Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, United States of America.
Kristen W LynchDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Roy ParkerDepartment of Biochemistry, University of Colorado Boulder, Boulder, Colorado, United States of America.ORCID 0000-0002-8412-4152
University of Colorado Boulder · USColorado State University · USHoward Hughes Medical Institute · USUniversity of Pennsylvania · USUniversity of Florida · US

Funding

Signal-Induced Regulation of Alternative RNA ProcessingR35GM118048 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KRISTEN W LYNCH · 2016 to 2026
$6.6M
Splicing and Nuclear Transport of Influenza Virus mRNAR01AI125524 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI COBB, MELANIE H., FONTOURA, BEATRIZ MA · 2016 to 2025
$5.6M
Breaking the Barrier to an HIV VaccineDP1AI175471 · NIAID · UNIVERSITY OF COLORADO · PI Sara Sawyer · 2022 to 2026
$5.5M
Hunting the HIV-1 UnicornDP1DA046108 · NIDA · UNIVERSITY OF COLORADO · PI SAWYER, SARA · 2018 to 2022
$4.5M
Characterizing Host-Virus Interactions in a New HIV Model OrganismR01OD034046 · OD · UNIVERSITY OF COLORADO · PI Sara Sawyer · 2022 to 2026
$3.6M
Host genetic barriers to virus spilloverR01AI137011 · NIAID · UNIVERSITY OF COLORADO · PI SAWYER, SARA · 2018 to 2022
$2.1M
A High-memory Supercomputer for Proteomics, Text Mining and Microbiome ResearchS10OD012300 · OD · UNIVERSITY OF COLORADO · PI AHN, NATALIE G. · 2013 to 2013
$1.9M
Determining the specificity and biological functions of widespread host mRNA degradation by RNase LF32AI145112 · NIAID · UNIVERSITY OF COLORADO · PI BURKE, JAMES M · 2019 to 2021
$200k
NIAID NIH HHS DP1 AI175471NIAID NIH HHS F32 AI145112NIAID NIH HHS R01 AI125524NIAID NIH HHS R01 AI137011NIDA NIH HHS DP1 DA046108NIGMS NIH HHS R35 GM118048NIH HHS R01 OD034046NIH HHS S10 OD012300
6 · The paper itself

Abstract

The antiviral endoribonuclease, RNase L, is activated by the mammalian innate immune response to destroy host and viral RNA to ultimately reduce viral gene expression. Herein, we show that RNase L and RNase L-mediated mRNA decay are primarily localized to the cytoplasm. Consequently, RNA-binding proteins (RBPs) translocate from the cytoplasm to the nucleus upon RNase L activation due to the presence of intact nuclear RNA. The re-localization of RBPs to the nucleus coincides with global alterations to RNA processing in the nucleus. While affecting many host mRNAs, these alterations are pronounced in mRNAs encoding type I and type III interferons and correlate with their retention in the nucleus and reduction in interferon protein production. Similar RNA processing defects also occur during infection with either dengue virus or SARS-CoV-2 when RNase L is activated. These findings reveal that the distribution of RBPs between the nucleus and cytosol is dictated by the availability of RNA in each compartment. Thus, viral infections that trigger RNase L-mediated cytoplasmic RNA in the cytoplasm also alter RNA processing in the nucleus, resulting in an ingenious multi-step immune block to protein biogenesis.

Indexed as

COVID-19SARS-CoV-2AnimalsCytoplasmEndoribonucleasesHumansMammalsRNA, Messenger2-5A-dependent ribonucleaseEndoribonucleasesRNA, Messenger

Identifiers

PMID36318584
PMCPMC9651596
OpenAlexW4307841988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.