ArticleNucleic acids research2023
GenomicKB: a knowledge graph for the human genome.
Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- Integrating Clinical and Systemic Knowledge in Periodontal and Peri-Implant Disease Education Through a Knowledge Graph.Journal of dental education · 2026Article
- MetagenomicKG: a knowledge graph for metagenomic applications.Bioinformatics (Oxford, England) · 2026Article
- Bridging data and discovery: a survey on knowledge graphs in AI for science.National science review · 2026Review
- A review on knowledge graphs for healthcare: Resources, applications, and promises.Journal of biomedical informatics · 2025Review
- A Survey on Unifying Large Language Models and Knowledge Graphs for Biomedicine and Healthcare.KDD : proceedings. International Conference on Knowledge Discovery & Data Mining · 2025Article
- VaxKG: Integrating The Vaccine Ontology And VIOLIN For Advanced Vaccine Queries And LLM-Powered Chat Systems.bioRxiv : the preprint server for biology · 2025Article
- Knowledge graphs in psychiatric research: Potential applications and future perspectives.Acta psychiatrica Scandinavica · 2025Review
- Homo Sapiens Chromosomal Location Ontology: A Framework for Genomic Data in Biomedical Knowledge Graphs.Scientific data · 2025Article
- Petagraph: A large-scale unifying knowledge graph framework for integrating biomolecular and biomedical data.Scientific data · 2024Article
- HeteroKGRep: Heterogeneous Knowledge Graph based Drug Repositioning.Knowledge-based systems · 2024Article
- Knowledge Graph and Large Language Model Co-learning via Structure-oriented Retrieval Augmented Generation.Bulletin of the Technical Committee on Data Engineering · 2024Article
- KSDKG: construction and application of knowledge graph for kidney stone disease based on biomedical literature and public databases.Health information science and systems · 2024Article
- Review
- Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation.Nucleic acids research · 2024Article
- Phenome-wide identification of therapeutic genetic targets, leveraging knowledge graphs, graph neural networks, and UK Biobank data.Science advances · 2024Article
- MetagenomicKG: a knowledge graph for metagenomic applications.bioRxiv : the preprint server for biology · 2024Article
- Knowledge Graph for Breast Cancer Prevention and Treatment: Literature-Based Data Analysis Study.JMIR medical informatics · 2024Article
- VaxKG: Integrating The Vaccine Ontology And VIOLIN For Advanced Vaccine Queries And LLM-Powered Chat Systems.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2024Article
- A scalable tool for analyzing genomic variants of humans using knowledge graphs and graph machine learning.Frontiers in big data · 2024Article
- Selective UMLS knowledge infusion for biomedical question answering.Scientific reports · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
Abstract
Genomic Knowledgebase (GenomicKB) is a graph database for researchers to explore and investigate human genome, epigenome, transcriptome, and 4D nucleome with simple and efficient queries. The database uses a knowledge graph to consolidate genomic datasets and annotations from over 30 consortia and portals, including 347 million genomic entities, 1.36 billion relations, and 3.9 billion entity and relation properties. GenomicKB is equipped with a web-based query system (https://gkb.dcmb.med.umich.edu/) which allows users to query the knowledge graph with customized graph patterns and specific constraints on entities and relations. Compared with traditional tabular-structured data stored in separate data portals, GenomicKB emphasizes the relations among genomic entities, intuitively connects isolated data matrices, and supports efficient queries for scientific discoveries. GenomicKB transforms complicated analysis among multiple genomic entities and relations into coding-free queries, and facilitates data-driven genomic discoveries in the future.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.