Evidence map›Paper›PMID 36318036›Full record

ArticleMicrobiology spectrum2022

Genomic and Phenotypic Trait Variation of the Opportunistic Human Pathogen Aspergillus flavus and Its Close Relatives.

E Anne Hatmaker, Manuel Rangel-Grimaldo, Huzefa A Raja, Hadi Pourhadi, Sonja L Knowles, Kevin Fuller, Emily M Adams, Jorge D Lightfoot, Rafael W Bastos, Gustavo H Goldman and 2 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Virulence ofVirulence · 2026
    Article
  2. Opportunistic pathogenicity in fungi can transcend species boundaries.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Journal of fungi (Basel, Switzerland) · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Draft genomes ofMicrobiology resource announcements · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

E Anne HatmakerDepartment of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.ORCID 0000-0002-7821-8160
Manuel Rangel-GrimaldoDepartment of Chemistry & Biochemistry, University of North Carolina at Greensborogrid.266860.c, Greensboro, North Carolina, USA.
Huzefa A RajaDepartment of Chemistry & Biochemistry, University of North Carolina at Greensborogrid.266860.c, Greensboro, North Carolina, USA.ORCID 0000-0002-0824-9463
Hadi PourhadiDepartment of Chemistry & Biochemistry, University of North Carolina at Greensborogrid.266860.c, Greensboro, North Carolina, USA.
Sonja L KnowlesDepartment of Chemistry & Biochemistry, University of North Carolina at Greensborogrid.266860.c, Greensboro, North Carolina, USA.
Kevin FullerDepartment of Microbiology and Immunology, University of Oklahoma Health Science Center, Oklahoma City, Oklahoma, USA.
Emily M AdamsDepartment of Microbiology and Immunology, University of Oklahoma Health Science Center, Oklahoma City, Oklahoma, USA.
Jorge D LightfootDepartment of Microbiology and Immunology, University of Oklahoma Health Science Center, Oklahoma City, Oklahoma, USA.
Rafael W BastosBiosciences Center, Federal University of Rio Grande do Norte, Natal, Brazil.
Gustavo H GoldmanFaculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brazil.ORCID 0000-0002-2986-350X
Nicholas H OberliesDepartment of Chemistry & Biochemistry, University of North Carolina at Greensborogrid.266860.c, Greensboro, North Carolina, USA.ORCID 0000-0002-0354-8464
Antonis RokasDepartment of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.ORCID 0000-0002-7248-6551
University of North Carolina at Greensboro · USUniversity of Oklahoma Health Sciences Center · USVanderbilt University · USUniversidade de São Paulo · BRUniversidade Federal do Rio Grande do Norte · BR

Funding

P30-CENTER CORE GRANT FOR VISION RESEARCHP30EY021725 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Michelle C Callegan · 2011 to 2026
$10.5M
Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relativesR01AI153356 · NIAID · VANDERBILT UNIVERSITY · PI Antonis Rokas · 2022 to 2026
$3.5M
Vision Science Training ProgramT32EY023202 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI CALLEGAN, MICHELLE C · 2014 to 2025
$952k
Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relativesR56AI146096 · NIAID · VANDERBILT UNIVERSITY · PI ROKAS, ANTONIS · 2020 to 2020
$592k
Examining the role of opportunistic human pathogen Aspergillus flavus in fungal keratitis eye infectionsF31EY033235 · NEI · VANDERBILT UNIVERSITY · PI HATMAKER, ELIZABETH ANNE · 2022 to 2023
$42k
NEI NIH HHS F31 EY033235NEI NIH HHS P30 EY021725NEI NIH HHS T32 EY023202NIAID NIH HHS R01 AI153356NIAID NIH HHS R56 AI146096
6 · The paper itself

Abstract

Fungal diseases affect millions of humans annually, yet fungal pathogens remain understudied. The mold Aspergillus flavus can cause both aspergillosis and fungal keratitis infections, but closely related species are not considered clinically relevant. To study the evolution of A. flavus pathogenicity, we examined genomic and phenotypic traits of two strains of A. flavus and three closely related species, Aspergillus arachidicola (two strains), Aspergillus parasiticus (two strains), and Aspergillus nomiae (one strain). We identified >3,000 orthologous proteins unique to A. flavus, including seven biosynthetic gene clusters present in A. flavus strains and absent in the three nonpathogens. We characterized secondary metabolite production for all seven strains under two clinically relevant conditions, temperature and salt concentration. Temperature impacted metabolite production in all species, whereas salinity did not affect production of any species. Strains of the same species produced different metabolites. Growth under stress conditions revealed additional heterogeneity within species. Using the invertebrate fungal disease model Galleria mellonella, we found virulence of strains of the same species varied widely; A. flavus strains were not more virulent than strains of the nonpathogens. In a murine model of fungal keratitis, we observed significantly lower disease severity and corneal thickness for A. arachidicola compared to other species at 48 h postinfection, but not at 72 h. Our work identifies variations in key phenotypic, chemical, and genomic attributes between A. flavus and its nonpathogenic relatives and reveals extensive strain heterogeneity in virulence that does not correspond to the currently established clinical relevance of these species.

Indexed as

AspergillosisKeratitisAnimalsAspergillus flavusAspergillus fumigatusGenomicsHumansMiceaspergillosisAspergillus flavusbiosynthetic gene clustercomparative genomicsevolutionfungal keratitisgenomesgenomicspathogenicityphenotypic variationsecondary metabolismsecondary metabolites

Identifiers

PMID36318036
PMCPMC9769809
OpenAlexW4307848419

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.