Evidence map›Paper›PMID 36316752›Full record

ArticleBiotechnology for biofuels and bioproducts2022

Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis.

Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D Nicora, Karl K Weitz, Yunqiao Pu, Tujin Shi, John R Cort, Arthur J Ragauskas, Bin Yang

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels and bioproducts, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Genomic, Proteomic, and Biochemical Study ofJournal of agricultural and food chemistry · 2025
    Article
  5. Review
  6. Article
  7. TheProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Deconstruction of Alkali Lignin and Lignocellulosic Substrates byJournal of fungi (Basel, Switzerland) · 2024
    Article
  9. Review
  10. Lignin Degradation byMolecules (Basel, Switzerland) · 2024
    Article
  11. Secretory Production of theJournal of microbiology and biotechnology · 2024
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Zhangyang XuBioproducts, Sciences & Engineering Laboratory, Department of Biological Systems Engineering, ashington State University Tri-Cities, Joint Appointment: Pacific Northwest National Laboratory, 2710 Crimson Way, Richland, WA, 99354, USA.
Bo PengBioproducts, Sciences & Engineering Laboratory, Department of Biological Systems Engineering, ashington State University Tri-Cities, Joint Appointment: Pacific Northwest National Laboratory, 2710 Crimson Way, Richland, WA, 99354, USA.
Reta Birhanu KitataBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, 99352, USA.
Carrie D NicoraBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, 99352, USA.
Karl K WeitzBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, 99352, USA.
Yunqiao PuJoint Institute for Biological Sciences, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Tujin ShiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, 99352, USA.
John R CortBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, 99352, USA.
Arthur J RagauskasJoint Institute for Biological Sciences, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Bin YangBioproducts, Sciences & Engineering Laboratory, Department of Biological Systems Engineering, ashington State University Tri-Cities, Joint Appointment: Pacific Northwest National Laboratory, 2710 Crimson Way, Richland, WA, 99354, USA. bin.yang@wsu.edu.
Pacific Northwest National Laboratory · USOak Ridge National Laboratory · USUniversity of Tennessee at Knoxville · US

Funding

Targeted proteomics technology for accurate quantitative single-cell proteomicsR01GM139858 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SHI, TUJIN · 2021 to 2024
$1.6M
NIGMS NIH HHS R01 GM139858NIH HHS R01GM139858
6 · The paper itself

Abstract

backgroundBacterial lignin degradation is believed to be primarily achieved by a secreted enzyme system. Effects of such extracellular enzyme systems on lignin structural changes and degradation pathways are still not clearly understood, which remains as a bottleneck in the bacterial lignin bioconversion process.

resultsThis study investigated lignin degradation using an isolated secretome secreted by Pseudomonas putida KT2440 that grew on glucose as the only carbon source. Enzyme assays revealed that the secretome harbored oxidase and peroxidase/Mn

conclusionsOverall, we discovered that bacterial extracellular degradation of alkali lignin to vanillin, vanillic acid, and other lignin-derived aromatics involved a series of oxidative cleavage, catalyzed by active DyP-type peroxidase, multicopper oxidase, and other accessory enzymes. These results will guide further metabolic engineering design to improve the efficiency of lignin bioconversion.

Indexed as

Lignin degradationNMRProteomicsPseudomonas putidaSecretome

Identifiers

PMID36316752
PMCPMC9620641
OpenAlexW4307885816

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.