Evidence map›Paper›PMID 36316479›Full record

ArticleNature immunology2022

A double-negative thymocyte-specific enhancer augments Notch1 signaling to direct early T cell progenitor expansion, lineage restriction and β-selection.

Mariko Kashiwagi, Daniela Salgado Figueroa, Ferhat Ay, Bruce A Morgan, Katia Georgopoulos

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Genetic susceptibility ofGlobal medical genetics · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. T Cell Development: From T-Lineage Specification to Intrathymic Maturation.Advances in experimental medicine and biology · 2025
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mariko KashiwagiCutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA. mariko.kashiwagi@cbrc2.mgh.harvard.edu.ORCID http://orcid.org/0000-0001-9625-9372
Daniela Salgado FigueroaCenters for Autoimmunity, Inflammation and Cancer Immunotherapy, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-6476-7612
Ferhat AyCenters for Autoimmunity, Inflammation and Cancer Immunotherapy, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-0708-6914
Bruce A MorganCutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA.
Katia GeorgopoulosCutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA. katia.georgopoulos@cbrc2.mgh.harvard.edu.ORCID http://orcid.org/0000-0002-8963-4258
Harvard University · USLa Jolla Institute for Immunology · US

Funding

Ikaros regulation: Study on hemolymphopoiesisR01HL140622 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI KATIA GEORGOPOULOS · 2017 to 2026
$6.1M
Studying the function of human genetic variation in the light of 3D genome organizationR35GM128938 · NIGMS · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Ferhat Ay · 2018 to 2026
$4.6M
Ikaros-based epigenetic regulation of T cell leukemogenesisR01CA158006 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GEORGOPOULOS, KATIA · 2012 to 2016
$2.0M
Epigenetic regulation of proinflammatory responses in the skinR01AR069132 · NIAMS · MASSACHUSETTS GENERAL HOSPITAL · PI GEORGOPOULOS, KATIA · 2016 to 2020
$1.8M
Molecular genetics of eccrine sweat gland developmentR21AR074748 · NIAMS · MASSACHUSETTS GENERAL HOSPITAL · PI MORGAN, BRUCE A · 2019 to 2020
$395k
NCI NIH HHS R01 CA158006NHLBI NIH HHS R01 HL140622NIAMS NIH HHS R01 AR069132NIAMS NIH HHS R21 AR074748NIGMS NIH HHS R35 GM128938
6 · The paper itself

Abstract

T cell differentiation requires Notch1 signaling. In the present study, we show that an enhancer upstream of Notch1 active in double-negative (DN) mouse thymocytes is responsible for raising Notch1 signaling intrathymically. This enhancer is required to expand multipotent progenitors intrathymically while delaying early differentiation until lineage restrictions have been established. Early thymic progenitors lacking the enhancer show accelerated differentiation through the DN stages and increased frequency of B, innate lymphoid (IL) and natural killer (NK) cell differentiation. Transcription regulators for T cell lineage restriction and commitment are expressed normally, but IL and NK cell gene expression persists after T cell lineage commitment and T cell receptor β VDJ recombination, Cd3 expression and β-selection have been impaired. This Notch1 enhancer is inactive in double-positive (DP) thymocytes. Its aberrant reactivation at this stage in Ikaros mutants is required for leukemogenesis. Thus, the DN-specific Notch1 enhancer harnesses the regulatory architecture of DN and DP thymocytes to achieve carefully orchestrated changes in Notch1 signaling required for early lineage restrictions and normal T cell differentiation.

Indexed as

Immunity, InnateThymocytesAnimalsCell DifferentiationCell LineageLymphocytesMiceReceptor, Notch1Thymus GlandReceptor, Notch1

Identifiers

PMID36316479
PMCPMC10187983
OpenAlexW4307715777

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.