Evidence map›Paper›PMID 36316476›Full record

ArticleNature immunology2022

Pan-vaccine analysis reveals innate immune endotypes predictive of antibody responses to vaccination.

Slim Fourati, Lewis E Tomalin, Matthew P Mulè, Daniel G Chawla, Bram Gerritsen, Dmitry Rychkov, Evan Henrich, Helen E R Miller, Thomas Hagan, Joann Diray-Arce and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Nature immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 130 citations in OpenAlex.

  1. Trial
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  8. Review
  9. Human Organoids as a Novel Tool for Vaccine Study.Advanced healthcare materials · 2026
    Review
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30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 14 institutions in 3 countries.

Slim FouratiDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA.ORCID http://orcid.org/0000-0001-6609-7587
Lewis E TomalinCenter for Biostatistics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0003-4545-7138
Matthew P MulèMultiscale Systems Biology Section, Laboratory of Immune System Biology, NIAID and Center for Human Immunology (CHI), NIH, Bethesda, MD, USA.
Daniel G ChawlaYale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-7667-9337
Bram GerritsenYale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-7065-3160
Dmitry RychkovDivision of Transplant Surgery, University of California, San Francisco, San Francisco, CA, USA.
Evan HenrichFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Helen E R MillerFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Thomas HaganStanford University School of Medicine, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-5254-5251
Joann Diray-ArcePrecision Vaccines Program, Boston Children's Hospital, Boston, MA, USA.
Patrick DunnImmPort Curation Team, NG Health Solutions, Rockville, MD, USA.ORCID http://orcid.org/0000-0003-1868-9689
Human Immunology Project Consortium (HIPC)
Ofer LevyPrecision Vaccines Program, Boston Children's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0002-5859-1945
Raphael GottardoFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Minnie M SarwalDivision of Transplant Surgery, University of California, San Francisco, San Francisco, CA, USA.
John S TsangMultiscale Systems Biology Section, Laboratory of Immune System Biology, NIAID and Center for Human Immunology (CHI), NIH, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-3186-3047
Mayte Suárez-FariñasCenter for Biostatistics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Bali PulendranStanford University School of Medicine, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-6517-4333
Steven H KleinsteinYale School of Medicine, New Haven, CT, USA. steven.kleinstein@yale.edu.ORCID http://orcid.org/0000-0003-4957-1544
Rafick-Pierre SékalyDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA. rafick.sekaly@emory.edu.ORCID http://orcid.org/0000-0002-7816-4828
Fred Hutch Cancer Center · USIcahn School of Medicine at Mount Sinai · USYale University · USEmory University · USBoston Children's Hospital · USLa Jolla Institute for Immunology · USStanford University · USUniversity of California, San Francisco · USBerkeley Public Health Division · USBridge University · SSColumbia University Irving Medical Center · USDrexel University · USSIB Swiss Institute of Bioinformatics · CHUniversity of California, Los Angeles · US

Funding

Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Project 3 - Ex vivo immune profiling of dengue viruses and vaccinesU19AI118610 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KASARSKIS, ANDREW · 2015 to 2021
$46.6M
Systems Biological Analysis of Innate and Adaptive Responses to VaccinationU19AI090023 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI, LI, SHUZHAO · 2010 to 2021
$45.0M
Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Bjoern Peters · 2015 to 2026
$36.7M
Systems Biology CoreU19AI128914 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Margaret Juliana McElrath, KENNETH D STUART · 2017 to 2026
$29.5M
Viral Assays CoreU19AI128949 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Peter Alan Sims · 2017 to 2026
$26.4M
Transcriptomics to define biomarkers of neonatal vaccine immunogenicityU19AI118608 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI LEVY, OFER · 2017 to 2021
$24.7M
Systems biological assessment of T cell responses to vaccinationU19AI167903 · NIAID · STANFORD UNIVERSITY · PI BALI PULENDRAN · 2022 to 2026
$13.2M
Project 3: Mapping the Evolution of Chronic Transplant Injury in the Context of CMV InfectionU19AI128913 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LANIER, LEWIS LEE · 2017 to 2021
$11.2M
Investigating the impact of helminth infection on microbioma composition and innate immunity generated during HepB vaccination. U19AI128910 · NIAID · DREXEL UNIVERSITY · PI KALEEBU, PONTIANO · 2017 to 2021
$7.0M
NIAID NIH HHS U19 AI089992NIAID NIH HHS U19 AI090023NIAID NIH HHS U19 AI118608NIAID NIH HHS U19 AI118610NIAID NIH HHS U19 AI118626NIAID NIH HHS U19 AI128910NIAID NIH HHS U19 AI128913NIAID NIH HHS U19 AI128914NIAID NIH HHS U19 AI128949NIAID NIH HHS U19 AI167903
6 · The paper itself

Abstract

Several studies have shown that the pre-vaccination immune state is associated with the antibody response to vaccination. However, the generalizability and mechanisms that underlie this association remain poorly defined. Here, we sought to identify a common pre-vaccination signature and mechanisms that could predict the immune response across 13 different vaccines. Analysis of blood transcriptional profiles across studies revealed three distinct pre-vaccination endotypes, characterized by the differential expression of genes associated with a pro-inflammatory response, cell proliferation, and metabolism alterations. Importantly, individuals whose pre-vaccination endotype was enriched in pro-inflammatory response genes known to be downstream of nuclear factor-kappa B showed significantly higher serum antibody responses 1 month after vaccination. This pro-inflammatory pre-vaccination endotype showed gene expression characteristic of the innate activation state triggered by Toll-like receptor ligands or adjuvants. These results demonstrate that wide variations in the transcriptional state of the immune system in humans can be a key determinant of responsiveness to vaccination.

Indexed as

Antibody FormationVaccinesAdjuvants, ImmunologicHumansImmunity, InnateVaccinationAdjuvants, ImmunologicVaccines

Identifiers

PMID36316476
PMCPMC9747610
OpenAlexW4307716642

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.