Evidence map›Paper›PMID 36316475›Full record

ArticleNature immunology2022

Transcriptional atlas of the human immune response to 13 vaccines reveals a common predictor of vaccine-induced antibody responses.

Thomas Hagan, Bram Gerritsen, Lewis E Tomalin, Slim Fourati, Matthew P Mulè, Daniel G Chawla, Dmitri Rychkov, Evan Henrich, Helen E R Miller, Joann Diray-Arce and 11 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06738082 (Influenza Vaccine Elicited Immune Response in Immunocompromised Patients), which is not on this map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06738082 completednot on this mapstarted 2024, after this paper: background citation

Influenza Vaccine Elicited Immune Response in Immunocompromised Patients

TypeobservationalSponsorInsel Gruppe AG, University Hospital BernRan2024 to 2025Enrolled147ConditionsInfluenza Vaccine, Immunocompromised PatientsArmsInfluenza vaccine
3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

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  12. CD8Cell reports. Medicine · 2026
    Review
  13. Article
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  15. Review
  16. Article
  17. Human Organoids as a Novel Tool for Vaccine Study.Advanced healthcare materials · 2026
    Review
  18. Article
  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Thomas HaganDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-5254-5251
Bram GerritsenDepartment of Pathology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-7065-3160
Lewis E TomalinCenter for Biostatistics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0003-4545-7138
Slim FouratiEmory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0001-6609-7587
Matthew P MulèMultiscale Systems Biology Section, Laboratory of Immune System Biology, NIAID and Center for Human Immunology (CHI), NIH, Bethesda, MD, USA.
Daniel G ChawlaDepartment of Pathology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-7667-9337
Dmitri RychkovDivision of Transplant Surgery, University of California, San Francisco, San Francisco, CA, USA.
Evan HenrichFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Helen E R MillerFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Joann Diray-ArcePrecision Vaccines Program, Boston Children's Hospital, Boston, MA, USA.
Patrick DunnImmPort Curation Team, NG Health Solutions, Rockville, MD, USA.ORCID http://orcid.org/0000-0003-1868-9689
Audrey LeeInstitute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford University, Stanford, CA, USA.
Human Immunology Project Consortium (HIPC)
Ofer LevyPrecision Vaccines Program, Boston Children's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0002-5859-1945
Raphael GottardoFred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-3867-0232
Minne M SarwalDivision of Transplant Surgery, University of California, San Francisco, San Francisco, CA, USA.
John S TsangMultiscale Systems Biology Section, Laboratory of Immune System Biology, NIAID and Center for Human Immunology (CHI), NIH, Bethesda, MD, USA.
Mayte Suárez-FariñasCenter for Biostatistics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Rafick-Pierre SékalyEmory University School of Medicine, Atlanta, GA, USA.
Steven H KleinsteinDepartment of Pathology, Yale School of Medicine, New Haven, CT, USA. steven.kleinstein@yale.edu.ORCID http://orcid.org/0000-0003-4957-1544
Bali PulendranInstitute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford University, Stanford, CA, USA. bpulend@stanford.edu.ORCID http://orcid.org/0000-0001-6517-4333

Funding

VACCINE INDUCED IMMUNITY IN THE YOUNG AND AGEDU19AI057266 · NIAID · EMORY UNIVERSITY · PI Rafi Ahmed · 2003 to 2026
$81.7M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Project 3 - Ex vivo immune profiling of dengue viruses and vaccinesU19AI118610 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KASARSKIS, ANDREW · 2015 to 2021
$46.6M
Systems Biological Analysis of Innate and Adaptive Responses to VaccinationU19AI090023 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI, LI, SHUZHAO · 2010 to 2021
$45.0M
Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Bjoern Peters · 2015 to 2026
$36.7M
Systems Biology CoreU19AI128914 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Margaret Juliana McElrath, KENNETH D STUART · 2017 to 2026
$29.5M
Viral Assays CoreU19AI128949 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Peter Alan Sims · 2017 to 2026
$26.4M
Transcriptomics to define biomarkers of neonatal vaccine immunogenicityU19AI118608 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI LEVY, OFER · 2017 to 2021
$24.7M
Systems biological assessment of T cell responses to vaccinationU19AI167903 · NIAID · STANFORD UNIVERSITY · PI BALI PULENDRAN · 2022 to 2026
$13.2M
Project 3: Mapping the Evolution of Chronic Transplant Injury in the Context of CMV InfectionU19AI128913 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LANIER, LEWIS LEE · 2017 to 2021
$11.2M
Investigating the impact of helminth infection on microbioma composition and innate immunity generated during HepB vaccination. U19AI128910 · NIAID · DREXEL UNIVERSITY · PI KALEEBU, PONTIANO · 2017 to 2021
$7.0M
MICROBES, DENDRITIC CELL SUBSETS AND T-CELL IMMUNITYR01AI048638 · NIAID · STANFORD UNIVERSITY · PI PULENDRAN, BALI · 2001 to 2024
$4.5M
NIAID NIH HHS R01 AI048638NIAID NIH HHS U01 AI165527NIAID NIH HHS U19 AI057266NIAID NIH HHS U19 AI089992NIAID NIH HHS U19 AI090023NIAID NIH HHS U19 AI118608NIAID NIH HHS U19 AI118610NIAID NIH HHS U19 AI118626NIAID NIH HHS U19 AI128910NIAID NIH HHS U19 AI128913NIAID NIH HHS U19 AI128914NIAID NIH HHS U19 AI128949NIAID NIH HHS U19 AI167903NIDDK NIH HHS R37 DK057665
6 · The paper itself

Abstract

Systems vaccinology has defined molecular signatures and mechanisms of immunity to vaccination. However, comparative analysis of immunity to different vaccines is lacking. We integrated transcriptional data of over 3,000 samples, from 820 adults across 28 studies of 13 vaccines and analyzed vaccination-induced signatures of antibody responses. Most vaccines induced signatures of innate immunity and plasmablasts at days 1 and 7, respectively, after vaccination. However, the yellow fever vaccine induced an early transient signature of T and B cell activation at day 1, followed by delayed antiviral/interferon and plasmablast signatures that peaked at days 7 and 14-21, respectively. Thus, there was no evidence for a 'universal signature' that predicted antibody response to all vaccines. However, accounting for the asynchronous nature of responses, we defined a time-adjusted signature that predicted antibody responses across vaccines. These results provide a transcriptional atlas of immunity to vaccination and define a common, time-adjusted signature of antibody responses.

Indexed as

Antibody FormationVaccinesAdultAntibodies, ViralGene Expression ProfilingHumansImmunity, InnateVaccinationAntibodies, ViralVaccines

Identifiers

PMID36316475
PMCPMC9869360

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.