Evidence map›Paper›PMID 36316451›Full record

ArticleNature microbiology2022

Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing.

Benjamin A Adler, Tomas Hessler, Brady F Cress, Arushi Lahiri, Vivek K Mutalik, Rodolphe Barrangou, Jillian Banfield, Jennifer A Doudna

Open access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Phage as a prospective arsenal against superbugs.Molecular biology reports · 2026
    Review
  6. Article
  7. Review
  8. Article
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  11. Article
  12. Article
  13. Article
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  16. Review
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  18. Review
  19. Occurrence and applications of CRISPR-Cas systems in bifidobacteria.Applied and environmental microbiology · 2026
    Review
  20. Review

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Benjamin A AdlerCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-7488-3040
Tomas HesslerInnovative Genomics Institute, University of California, Berkeley, CA, USA.
Brady F CressCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-2948-2846
Arushi LahiriDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Vivek K MutalikInnovative Genomics Institute, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-7934-0400
Rodolphe BarrangouInnovative Genomics Institute, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-0648-3504
Jillian BanfieldInnovative Genomics Institute, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8203-8771
Jennifer A DoudnaCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, USA. doudna@berkeley.edu.ORCID http://orcid.org/0000-0001-9161-999X
QB3 · USPlanetary Science Institute · USLawrence Berkeley National Laboratory · USNorth Carolina State University · USUniversity of California, Berkeley · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

CRISPR-Cas13 proteins are RNA-guided RNA nucleases that defend against incoming RNA and DNA phages by binding to complementary target phage transcripts followed by general, non-specific RNA degradation. Here we analysed the defensive capabilities of LbuCas13a from Leptotrichia buccalis and found it to have robust antiviral activity unaffected by target phage gene essentiality, gene expression timing or target sequence location. Furthermore, we find LbuCas13a antiviral activity to be broadly effective against a wide range of phages by challenging LbuCas13a against nine E. coli phages from diverse phylogenetic groups. Leveraging the versatility and potency enabled by LbuCas13a targeting, we applied LbuCas13a towards broad-spectrum phage editing. Using a two-step phage-editing and enrichment method, we achieved seven markerless genome edits in three diverse phages with 100% efficiency, including edits as large as multi-gene deletions and as small as replacing a single codon. Cas13a can be applied as a generalizable tool for editing the most abundant and diverse biological entities on Earth.

Indexed as

BacteriophagesGene EditingAntiviral AgentsCRISPR-Cas SystemsEscherichia coliPhylogenyRNAAntiviral AgentsRNA

Identifiers

PMID36316451
PMCPMC9712115
OpenAlexW4307717101

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.