Evidence map›Paper›PMID 36316380›Full record

ArticleScientific reports2022

Automated detection of patterned single-cells within hydrogel using deep learning.

Tanmay Debnath, Ren Hattori, Shunya Okamoto, Takayuki Shibata, Tuhin Subhra Santra, Moeto Nagai

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tanmay DebnathDepartment of Mechanical Engineering, Toyohashi University of Technology, Toyohashi, Aichi, 441-8580, Japan. tanmay.debnath@mems.me.tut.ac.jp.
Ren HattoriDepartment of Mechanical Engineering, Toyohashi University of Technology, Toyohashi, Aichi, 441-8580, Japan.
Shunya OkamotoDepartment of Mechanical Engineering, Toyohashi University of Technology, Toyohashi, Aichi, 441-8580, Japan.
Takayuki ShibataDepartment of Mechanical Engineering, Toyohashi University of Technology, Toyohashi, Aichi, 441-8580, Japan.
Tuhin Subhra SantraIndian Institute of Technology Madras, Chennai, Tamil Nadu, 600036, India.
Moeto NagaiDepartment of Mechanical Engineering, Toyohashi University of Technology, Toyohashi, Aichi, 441-8580, Japan. nagai@me.tut.ac.jp.

Funding

Japan Society for the Promotion of Science JP20H02115Ministry of Education, Culture, Sports, Science and Technology JP20K20961
6 · The paper itself

Abstract

Single-cell analysis has been widely used in various biomedical engineering applications, ranging from cancer diagnostics, and immune response monitoring to drug screening. Single-cell isolation is fundamental for observing single-cell activities and an automatic finding method of accurate and reliable cell detection with few possible human errors is also essential. This paper reports trapping single cells into photo patternable hydrogel microwell arrays and isolating them. Additionally, we present an object detection-based DL algorithm that detects single cells in microwell arrays and predicts the presence of cells in resource-limited environments at the highest possible mAP (mean average precision) of 0.989 with an average inference time of 0.06 s. This algorithm leads to the enhancement of the high-throughput single-cell analysis, establishing high detection precision and reduced experimentation time.

Indexed as

Deep LearningHydrogelsHumansHydrogels

Identifiers

PMID36316380
PMCPMC9622733

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.