Evidence map›Paper›PMID 36315915›Full record

ArticleJCO precision oncology2022

APOBEC Mutational Signatures in Hormone Receptor-Positive Human Epidermal Growth Factor Receptor 2-Negative Breast Cancers Are Associated With Poor Outcomes on CDK4/6 Inhibitors and Endocrine Therapy.

Sarah Sammons, Kira Raskina, Natalie Danziger, Laura Alder, Alexa B Schrock, Jeffrey M Venstrom, Keith L Knutson, E Aubrey Thompson, Kim McGregor, Ethan Sokol and 1 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in JCO precision oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Genomic Predictive Biomarkers in Breast Cancer: TheInternational journal of molecular sciences · 2025
    Review
  2. Article
  3. Molecular Basis of Breast Tumor Heterogeneity.Advances in experimental medicine and biology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Sarah SammonsDuke Cancer Institute, Duke University, Durham, NC.ORCID 0000-0003-2589-9422
Kira RaskinaFoundation Medicine, Inc, Cambridge, MA.ORCID 0000-0003-0899-6175
Natalie DanzigerFoundation Medicine, Inc, Cambridge, MA.ORCID 0000-0003-2642-7160
Laura AlderDuke Cancer Institute, Duke University, Durham, NC.ORCID 0000-0003-2228-4094
Alexa B SchrockFoundation Medicine, Inc, Cambridge, MA.ORCID 0000-0003-0106-9096
Jeffrey M VenstromFoundation Medicine, Inc, Cambridge, MA.
Keith L KnutsonDepartment of Immunology, Mayo Clinic, Jacksonville, FL.
E Aubrey ThompsonDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL.
Kim McGregorFoundation Medicine, Inc, Cambridge, MA.
Ethan SokolFoundation Medicine, Inc, Cambridge, MA.ORCID 0000-0002-2988-0537
Saranya ChumsriDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL.ORCID 0000-0001-7117-1446
Foundation Medicine (United States)Duke Medical Center · USWinnMed · USMayo Clinic in Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeAPOBEC mutagenesis underlies somatic evolution and accounts for tumor heterogeneity in several cancers, including breast cancer (BC). In this study, we evaluated the characteristics of a real-world cohort for time-to-treatment discontinuation (TTD) and overall survival on CDK4/6 inhibitors (CDK4/6i) plus endocrine therapy (ET) and immune checkpoint inhibitors.

methodsComprehensive genomic profiling results from 29,833 BC samples were analyzed for tumor mutational burden and APOBEC signatures. For clinical outcomes, a deidentified nationwide (United States-based) BC Clinico-Genomic Database (CGDB) was evaluated with log-rank and Cox models. Patients with hormone receptor-positive (HR+) human epidermal growth factor receptor 2-negative (HER2-) BC who received first-line ET and CDK4/6i were included. Eligible patients from Mayo Clinic and Duke University were HR+ HER2- BC with sequencing data between September 2013 and July 2020.

resultsOf 29,833 samples sequenced, 7.9% were APOBEC+ with a high rate in invasive lobular carcinoma (16.7%) and in metastatic tumors (9.7%) relative to locally biopsied BC (4.3%;

conclusionAPOBEC+ HR+ HER2- patients had shorter TTD on first-line ET plus CDK4/6i relative to APOBEC- patients. Further research is needed to optimize the treatment of APOBEC+ HR+ HER2- BC and to investigate the efficacy of immunotherapeutic strategies in this population.

Indexed as

APOBEC DeaminasesBreast NeoplasmsReceptors, EstrogenAntineoplastic Combined Chemotherapy ProtocolsBiomarkers, TumorCyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6Erb-b2 Receptor Tyrosine KinasesHumansImmune Checkpoint InhibitorsUnited StatesAPOBEC DeaminasesBiomarkers, TumorCDK4 protein, humanCyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6ERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesImmune Checkpoint InhibitorsReceptors, Estrogen

Identifiers

PMID36315915
PMCPMC9666120
OpenAlexW4307886049

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.