Evidence map›Paper›PMID 36315647›Full record

ArticleBrain : a journal of neurology2023

Altered synaptic connectivity in an in vitro human model of STXBP1 encephalopathy.

Faye McLeod, Anna Dimtsi, Amy C Marshall, David Lewis-Smith, Rhys Thomas, Gavin J Clowry, Andrew J Trevelyan

Open access · hybridAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Neurologist's Black Swan: Molecular Basis of Prenatal Seizures.International journal of molecular sciences · 2025
    Review
  5. Article
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  8. Article
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  15. Genes · 2023
    Review
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  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Faye McLeodBiosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.ORCID 0000-0003-0379-7476
Anna DimtsiBiosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Amy C MarshallBiosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
David Lewis-SmithNewcastle University Translational and Clinical Research Institute, Newcastle upon Tyne NE2 4HH, UK.ORCID 0000-0002-1735-8178
Rhys ThomasNewcastle University Translational and Clinical Research Institute, Newcastle upon Tyne NE2 4HH, UK.
Gavin J ClowryBiosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Andrew J TrevelyanBiosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Newcastle University · GBRoyal Victoria Infirmary · GB

Funding

Medical Research Council MR/R005427/1Medical Research Council MR/R006237/1Wellcome Trust 102037Wellcome Trust 203914/Z/16/Z
6 · The paper itself

Abstract

Early infantile developmental and epileptic encephalopathies are devastating conditions, generally of genetic origin, but the pathological mechanisms often remain obscure. A major obstacle in this field of research is the difficulty of studying cortical brain development in humans, at the relevant time period in utero. To address this, we established an in vitro assay to study the impact of gene variants on the developing human brain by using living organotypic cultures of the human subplate and neighbouring cortical regions, prepared from ethically sourced, 14-17 post-conception week brain tissue (www.hdbr.org). We were able to maintain cultures for several months, during which time the gross anatomical structures of the cortical plate, subplate and marginal zone persisted, while neurons continued to develop morphologically and form new synaptic networks. This preparation thus permits the study of genetic manipulations and their downstream effects on an intact developing human cortical network. We focused on STXBP1 haploinsufficiency, which is among the most common genetic causes of developmental and epileptic encephalopathy. This was induced using shRNA interference, leading to impaired synaptic function and a reduced density of glutamatergic synapses. We thereby provide a critical proof-of-principle for how to study the impact of any gene of interest on the development of the human cortex.

Indexed as

Brain DiseasesEpilepsy, GeneralizedBrainHumansMunc18 ProteinsNeuronsSynapsesMunc18 ProteinsSTXBP1 protein, humanhuman organotypic slicesneurodevelopmentSTXBP1subplatesynapses

Identifiers

PMID36315647
PMCPMC9976961
OpenAlexW4307715036

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.