Evidence map›Paper›PMID 36314961›Full record

ArticleMicrobiology spectrum2022

The Evolution and Global Spatiotemporal Dynamics of Senecavirus A.

Huiguang Wu, Chen Li, Yongchen Ji, Chunxiao Mou, Zhenhai Chen, Jingwen Zhao

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
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  11. Seneca Valley virus 3CFrontiers in microbiology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Huiguang WuCollege of Veterinary Medicine, Yangzhou Universitygrid.268415.c, Yangzhou, Jiangsu Province, China.
Chen LiCollege of Veterinary Medicine, Yangzhou Universitygrid.268415.c, Yangzhou, Jiangsu Province, China.
Yongchen JiCollege of Veterinary Medicine, Yangzhou Universitygrid.268415.c, Yangzhou, Jiangsu Province, China.
Chunxiao MouCollege of Veterinary Medicine, Yangzhou Universitygrid.268415.c, Yangzhou, Jiangsu Province, China.
Zhenhai ChenCollege of Veterinary Medicine, Yangzhou Universitygrid.268415.c, Yangzhou, Jiangsu Province, China.
Jingwen ZhaoCollege of Animal Science and Technology, Yangzhou Universitygrid.268415.c, Yangzhou, Jiangsu Province, China.ORCID 0000-0001-8308-1384
Yangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recurrent outbreaks of senecavirus A (SVA)-associated vesicular disease have led to a large number of infected pigs being culled and has caused considerable economic losses to the swine industry. Although SVA was discovered 2 decades ago, knowledge about the evolutionary and transmission histories of SVA remains unclear. Herein, we performed an integrated analysis of the recombination, phylogeny, selection, and spatiotemporal dynamics of SVA. Phylogenetic analysis demonstrated that SVA diverged into two main branches, clade I (pre-2007 strains) and clade II (post-2007 strains). Importantly, analysis of selective strength showed that clade II was evolving under relaxed selection compared with clade I. Positive selection analysis identified 27 positive selective sites, most of which are located on the outer surface of capsid protomer or on the important functional domains of nonstructure proteins. Bayesian phylodynamics suggested that the estimated time to the most recent common ancestor of SVA was around 1986, and the estimated substitution rate of SVA was 3.3522 × 10

Indexed as

PicornaviridaeSwine DiseasesAnimalsBayes TheoremGenome, ViralPhylogenySwineevolutionphylogenyselectionsenecavirus Aspatiotemporal dynamics

Identifiers

PMID36314961
PMCPMC9769604
OpenAlexW4307775460

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.