Evidence map›Paper›PMID 36314733›Full record

ArticleThe EMBO journal2022

The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 and is targeted by a bacterial type-III effector.

Gang Yu, Maria Derkacheva, Jose S Rufian, Carla Brillada, Kathrin Kowarschik, Shushu Jiang, Paul Derbyshire, Miaomiao Ma, Thomas A DeFalco, Rafael J L Morcillo and 7 more

Abstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Root colonization by beneficial rhizobacteria.FEMS microbiology reviews · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Post-Golgi Trafficking in Plant Cells.Sub-cellular biochemistry · 2026
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Molecular Dialog ofInternational journal of molecular sciences · 2025
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Gang Yu *Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0002-6720-7490
Maria Derkacheva *The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0001-8355-6546
Jose S Rufian *Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0002-3871-3706
Carla BrilladaFaculty of Biology, Institute of Biology II, Albert-Ludwigs-University Freiburg, Freiburg, Germany.ORCID 0000-0002-0252-9747
Kathrin KowarschikLeibniz Institute for Plant Biochemistry, Halle (Saale), Germany.
Shushu JiangThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Paul DerbyshireThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0002-5095-9397
Miaomiao MaState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Thomas A DeFalcoInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-2897-1485
Rafael J L MorcilloShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.
Lena StransfeldThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Yali WeiShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.
Jian-Min ZhouState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-9943-2975
Frank L H MenkeThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0003-2490-4824
Marco TrujilloFaculty of Biology, Institute of Biology II, Albert-Ludwigs-University Freiburg, Freiburg, Germany.ORCID 0000-0002-5470-7277
Cyril ZipfelThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0003-4935-8583
Alberto P MachoShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0001-9935-8026

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant immunity is tightly controlled by a complex and dynamic regulatory network, which ensures optimal activation upon detection of potential pathogens. Accordingly, each component of this network is a potential target for manipulation by pathogens. Here, we report that RipAC, a type III-secreted effector from the bacterial pathogen Ralstonia solanacearum, targets the plant E3 ubiquitin ligase PUB4 to inhibit pattern-triggered immunity (PTI). PUB4 plays a positive role in PTI by regulating the homeostasis of the central immune kinase BIK1. Before PAMP perception, PUB4 promotes the degradation of non-activated BIK1, while after PAMP perception, PUB4 contributes to the accumulation of activated BIK1. RipAC leads to BIK1 degradation, which correlates with its PTI-inhibitory activity. RipAC causes a reduction in pathogen-associated molecular pattern (PAMP)-induced PUB4 accumulation and phosphorylation. Our results shed light on the role played by PUB4 in immune regulation, and illustrate an indirect targeting of the immune signalling hub BIK1 by a bacterial effector.

Indexed as

ArabidopsisArabidopsis ProteinsPathogen-Associated Molecular Pattern MoleculesPlant DiseasesPlant ImmunityProtein Serine-Threonine KinasesUbiquitin-Protein LigasesArabidopsis ProteinsBIK1 protein, ArabidopsisPathogen-Associated Molecular Pattern MoleculesProtein Serine-Threonine KinasesUbiquitin-Protein LigasesBIK1PAMP-triggered immunityphosphorylationPUB4Ralstonia solanacearum

Identifiers

PMID36314733
PMCPMC9713774

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.