Evidence map›Paper›PMID 36314723›Full record

ArticleThe EMBO journal2022

Intramembrane client recognition potentiates the chaperone functions of calnexin.

Nicolas Bloemeke, Kevin Meighen-Berger, Manuel Hitzenberger, Nina C Bach, Marina Parr, Joao Pl Coelho, Dmitrij Frishman, Martin Zacharias, Stephan A Sieber, Matthias J Feige

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Nicolas BloemekeDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.
Kevin Meighen-BergerDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.
Manuel HitzenbergerDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.ORCID 0000-0001-9726-2370
Nina C BachDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.
Marina ParrDepartment of Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Freising, Germany.
Joao Pl CoelhoDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.
Dmitrij FrishmanDepartment of Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Freising, Germany.
Martin ZachariasDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.ORCID 0000-0001-5163-2663
Stephan A SieberDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.
Matthias J FeigeDepartment of Bioscience, Center for Functional Protein Assemblies (CPA), TUM School of Natural Sciences, Technical University of Munich, Garching, Germany.ORCID 0000-0001-5435-4312
Technical University of Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One-third of the human proteome is comprised of membrane proteins, which are particularly vulnerable to misfolding and often require folding assistance by molecular chaperones. Calnexin (CNX), which engages client proteins via its sugar-binding lectin domain, is one of the most abundant ER chaperones, and plays an important role in membrane protein biogenesis. Based on mass spectrometric analyses, we here show that calnexin interacts with a large number of nonglycosylated membrane proteins, indicative of additional nonlectin binding modes. We find that calnexin preferentially bind misfolded membrane proteins and that it uses its single transmembrane domain (TMD) for client recognition. Combining experimental and computational approaches, we systematically dissect signatures for intramembrane client recognition by calnexin, and identify sequence motifs within the calnexin TMD region that mediate client binding. Building on this, we show that intramembrane client binding potentiates the chaperone functions of calnexin. Together, these data reveal a widespread role of calnexin client recognition in the lipid bilayer, which synergizes with its established lectin-based substrate binding. Molecular chaperones thus can combine different interaction modes to support the biogenesis of the diverse eukaryotic membrane proteome.

Indexed as

Molecular ChaperonesProteomeCalcium-Binding ProteinsCalnexinHumansLectinsMembrane ProteinsProtein FoldingCalcium-Binding ProteinsCalnexinLectinsMembrane ProteinsMolecular ChaperonesProteomecalnexinchaperonemembrane protein

Identifiers

PMID36314723
PMCPMC9753464
OpenAlexW4307689944

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.