Evidence map›Paper›PMID 36313598›Full record

ArticleAnimal reproduction2022

Profiling and Functional Analysis of long non-coding RNAs in yak healthy and atretic follicles.

Yilong Yao, Zhaoyi Meng, Wangchang Li, Yefen Xu, Yunlu Wang, Sizhu Suolang, Guangyin Xi, Lei Cao, Min Guo

Abstract read
In one paragraph

Article in Animal reproduction, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yilong YaoAnimal Science Department, Tibet Agriculture & Animal Husbandry College, Nyingchi, Tibet, China.ORCID 0000-0003-3525-1152
Zhaoyi MengAnimal Science Department, Tibet Agriculture & Animal Husbandry College, Nyingchi, Tibet, China.ORCID 0000-0002-6206-6799
Wangchang LiGenome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID 0000-0003-1965-8024
Yefen XuAnimal Science Department, Tibet Agriculture & Animal Husbandry College, Nyingchi, Tibet, China.ORCID 0000-0002-2620-8016
Yunlu WangAnimal Science Department, Tibet Agriculture & Animal Husbandry College, Nyingchi, Tibet, China.ORCID 0000-0003-1905-7333
Sizhu SuolangAnimal Science Department, Tibet Agriculture & Animal Husbandry College, Nyingchi, Tibet, China.ORCID 0000-0001-7063-9158
Guangyin XiCollege of Animal Sciences and Technology, China Agricultural University, Haidian, Beijing, China.ORCID 0000-0001-5997-6540
Lei CaoAnimal Science Department, Tibet Agriculture & Animal Husbandry College, Nyingchi, Tibet, China.ORCID 0000-0003-4190-3225
Min GuoCollege of Animal Sciences and Technology, China Agricultural University, Haidian, Beijing, China.ORCID 0000-0001-5878-079X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yak is the livestock on which people live in plateau areas, but its fecundity is low. Follicular development plays a decisive role in yak reproductive performance. As an important regulatory factor, the expression of long non-coding RNA (lncRNAs) in yak follicular development and its regulatory mechanism remains unclear. To explore the differentially expressed lncRNAs between healthy and atretic follicular in yaks. We used RNA-seq to construct lncRNA, miRNA, and mRNA expression profiles in yak atretic and healthy follicles, and the RNA sequence results were identified by qPCR. In addition, the correlation of lncRNA and targeted mRNA was also analyzed by Starbase software. Moreover, lncRNA/miRNA/mRNA networks were constructed by Cytoscape software, and the network was verified by dual-luciferase analysis. A total of 682 novel lncRNAs, 259 bta-miRNAs, and 1704 mRNAs were identified as differentially expressed between healthy and atretic follicles. Among them, 135 mRNAs were positively correlated with lncRNA expression and 97 were negatively correlated, which may be involved in the yak follicular development. In addition, pathway enrichment analysis of differentially expressed lncRNA host genes by Kyoto Genome Encyclopedia (KEGG) showed that host genes were mainly involved in hormone secretion, granulosa cell apoptosis, and follicular development. In conclusion, we identified a series of novel lncRNAs, constructed the lncRNA ceRNA regulatory network, and provided comprehensive resources for exploring the role of lncRNAs in yak ovarian follicular development.

Indexed as

atretic follicleshealthy follicleslncRNARNA-seqyak

Identifiers

PMID36313598
PMCPMC9613354

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