Evidence map›Paper›PMID 36311093›Full record

ArticleFrontiers in plant science2022

The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization.

Andres Jaramillo-Botero, Julian Colorado, Mauricio Quimbaya, Maria Camila Rebolledo, Mathias Lorieux, Thaura Ghneim-Herrera, Carlos A Arango, Luis E Tobón, Jorge Finke, Camilo Rocha and 7 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Questions and Consequences of Omics in Genetically Engineered Crop Regulation.Plant-environment interactions (Hoboken, N.J.) · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 5 countries.

Andres Jaramillo-BoteroChemistry and Chemical Engineering Division, California Institute of Technology, Pasadena, CA, United States.
Julian ColoradoDepartamento de Ingeniería Electrónica, Facultad de Ingeniería, Pontificia Universidad Javeriana, Bogotá D.C., Colombia.
Mauricio QuimbayaDepartamento de Ciencias Naturales y Matemáticas, Facultad de Ingeniería y Ciencias, Pontificia Universidad Javeriana, Cali, Valle del Cauca, Colombia.
Maria Camila RebolledoCIRAD, UMR AGAP, Montpellier, France.
Mathias LorieuxInternational Center for Tropical Agriculture (CIAT), Cali, Valle del Cauca, Colombia.
Thaura Ghneim-HerreraDepartamento de Ciencias Biológicas, Facultad de Ciencias Naturales, Universidad Icesi, Cali, Colombia.
Carlos A ArangoDepartamento de Ciencias Químicas, Facultad de Ciencias Naturales, Universidad Icesi, Cali, Valle del Cauca, Colombia.
Luis E TobónCentro de Investigación de la Caña de Azúcar (CENICAÑA), Florida, Valle del Cauca, Colombia.
Jorge FinkeDepartamento de Ingeniería Electrónica y Ciencias de la Computación, Facultad de Ingeniería y Ciencias, Pontificia Universidad Javeriana, Cali, Valle del Cauca, Colombia.
Camilo RochaDepartamento de Ingeniería Electrónica y Ciencias de la Computación, Facultad de Ingeniería y Ciencias, Pontificia Universidad Javeriana, Cali, Valle del Cauca, Colombia.
Fernando MuñozCentro de Investigación de la Caña de Azúcar (CENICAÑA), Florida, Valle del Cauca, Colombia.
John J RiascosCentro de Investigación de la Caña de Azúcar (CENICAÑA), Florida, Valle del Cauca, Colombia.
Fernando SilvaCentro de Investigación de la Caña de Azúcar (CENICAÑA), Florida, Valle del Cauca, Colombia.
Ngonidzashe ChirindaInternational Center for Tropical Agriculture (CIAT), Cali, Valle del Cauca, Colombia.
Mario CaccamoNational Institute of Agricultural Botany (NIAB), Cambridge, United Kingdom.
Klaas VandepoeleDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium.
William A GoddardChemistry and Chemical Engineering Division, California Institute of Technology, Pasadena, CA, United States.
Pontificia Universidad Javeriana · COCalifornia Institute of Technology · USCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRNational Institute of Agricultural Botany · GBVlaams Instituut voor Biotechnologie · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The OMICAS alliance is part of the Colombian government's Scientific Ecosystem, established between 2017-2018 to promote world-class research, technological advancement and improved competency of higher education across the nation. Since the program's kick-off, OMICAS has focused on consolidating and validating a multi-scale, multi-institutional, multi-disciplinary strategy and infrastructure to advance discoveries in plant science and the development of new technological solutions for improving agricultural productivity and sustainability. The strategy and methods described in this article, involve the characterization of different crop models, using high-throughput, real-time phenotyping technologies as well as experimental tissue characterization at different levels of the omics hierarchy and under contrasting conditions, to elucidate epigenome-, genome-, proteome- and metabolome-phenome relationships. The massive data sets are used to derive in-silico models, methods and tools to discover complex underlying structure-function associations, which are then carried over to the production of new germplasm with improved agricultural traits. Here, we describe OMICAS' R&D trans-disciplinary multi-project architecture, explain the overall strategy and methods for crop-breeding, recent progress and results, and the overarching challenges that lay ahead in the field.

Indexed as

crops breedingfoodomicsin-silico optimizationMulti-omicsnanotechnologyrice and sugarcane

Identifiers

PMID36311093
PMCPMC9614048
OpenAlexW4303969325

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.