Evidence map›Paper›PMID 36307852›Full record

ArticleMalaria journal2022

Molecular surveillance for anti-malarial drug resistance and genetic diversity of Plasmodium falciparum after chloroquine and sulfadoxine-pyrimethamine withdrawal in Quibdo, Colombia, 2018.

Angela Patricia Guerra, Mario Javier Olivera, Liliana Jazmín Cortés, Stella M Chenet, Alexandre Macedo de Oliveira, Naomi W Lucchi

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Angela Patricia GuerraGrupo de Parasitología, Instituto Nacional de Salud, Bogotá, Colombia. aguerra@ins.gov.co.
Mario Javier OliveraGrupo de Parasitología, Instituto Nacional de Salud, Bogotá, Colombia.
Liliana Jazmín CortésGrupo de Parasitología, Instituto Nacional de Salud, Bogotá, Colombia.
Stella M ChenetInstituto de Investigaciones en Ciencias Biomédicas, Universidad Ricardo Palma, Lima, Perú.
Alexandre Macedo de OliveiraMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, GA, Atlanta, USA.
Naomi W LucchiMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, GA, Atlanta, USA.
Instituto Nacional de Salud · COCenter for Global Health · USDivision of Parasitic Diseases and Malaria · USUniversidad Ricardo Palma · PE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundResistance to anti-malarial drugs is associated with polymorphisms in target genes and surveillance for these molecular markers is important to detect the emergence of mutations associated with drug resistance and signal recovering sensitivity to anti-malarials previously used.

methodsThe presence of polymorphisms in genes associated with Plasmodium falciparum resistance to chloroquine and sulfadoxine-pyrimethamine was evaluated by Sanger sequencing, in 85 P. falciparum day of enrollment samples from a therapeutic efficacy study of artemether-lumefantrine conducted in 2018-2019 in Quibdo, Colombia. Samples were genotyped to assess mutations in pfcrt (codons 72-76), pfdhfr (codons 51, 59, 108, and 164), and pfdhps genes (codons 436, 437, 540, and 581). Further, the genetic diversity of infections using seven neutral microsatellites (NMSs) (C2M34, C3M69, Poly α, TA1, TA109, 2490, and PfPK2) was assessed.

resultsAll isolates carried mutant alleles for pfcrt (K76T and N75E), and for pfdhfr (N51I and S108N), while for pfdhps, mutations were observed only for codon A437G (32/73, 43.8%). Fifty samples (58.8%) showed a complete neutral microsatellites (NMS) profile. The low mean number of alleles (2 ± 0.57) per locus and mean expected heterozygosity (0.17 ± 0.03) showed a reduced genetic diversity. NMS multilocus genotypes (MMG) were built and nine MMG were identified.

conclusionsOverall, these findings confirm the fixation of chloroquine and pyrimethamine-resistant alleles already described in the literature, implying that these drugs are not currently appropriate for use in Colombia. In contrast, mutations in the pfdhps gene were only observed at codon 437, an indication that full resistance to sulfadoxine has not been achieved in Choco. MMGs found matched the clonal lineage E variant 1 previously reported in northwestern Colombia.

Indexed as

AntimalarialsMalaria, FalciparumArtemetherArtemether, Lumefantrine Drug CombinationChloroquineCodonColombiaDrug CombinationsDrug ResistanceHumansPlasmodium falciparumPolymorphism, GeneticPyrimethamineSulfadoxineAntimalarialsArtemetherArtemether, Lumefantrine Drug CombinationChloroquineCodonDrug Combinationsfanasil, pyrimethamine drug combinationPyrimethamineSulfadoxineChloroquineColombiaMolecular markersNeutral microsatellitesPlasmodium falciparumSulfadoxine-pyrimethamine

Identifiers

PMID36307852
PMCPMC9617338
OpenAlexW4307713419

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.