Evidence map›Paper›PMID 36307631›Full record

ArticleMolecular biotechnology2024

A Comprehensive Study to Unleash the Putative Inhibitors of Serotype2 of Dengue Virus: Insights from an In Silico Structure-Based Drug Discovery.

Sajal Kumar Halder, Iqrar Ahmad, Jannatul Fardous Shathi, Maria Mulla Mim, Md Rakibul Hassan, Md Johurul Islam Jewel, Piyali Dey, Md Sirajul Islam, Harun Patel, Md Reaz Morshed and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

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  15. Molecules (Basel, Switzerland) · 2023
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  18. Metabolites · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Sajal Kumar HalderDepartment of Biochemistry and Molecular Biology, Jahangirnagar University, Savar, Dhaka, 1342, Bangladesh.ORCID http://orcid.org/0000-0001-7316-6210
Iqrar AhmadDivision of Computer Aided Drug Design, Department of Pharmaceutical Chemistry, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, Maharashtra, 425405, India.
Jannatul Fardous ShathiDepartment of Biochemistry and Molecular Biology, Jahangirnagar University, Savar, Dhaka, 1342, Bangladesh.
Maria Mulla MimDepartment of Pharmacy, Jahangirnagar University, Savar, Dhaka, 1342, Bangladesh.
Md Rakibul HassanDepartment of Biochemistry, Gono Bishwabidyalay, Savar, Dhaka, 1344, Bangladesh.
Md Johurul Islam JewelDepartment of Biochemistry and Molecular Biology, Primeasia University, Banani, Dhaka, 1213, Bangladesh.
Piyali DeyDepartment of Biochemistry and Molecular Biology, Primeasia University, Banani, Dhaka, 1213, Bangladesh.
Md Sirajul IslamDepartment of Biochemistry and Molecular Biology, Primeasia University, Banani, Dhaka, 1213, Bangladesh.
Harun PatelDivision of Computer Aided Drug Design, Department of Pharmaceutical Chemistry, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, Maharashtra, 425405, India.
Md Reaz MorshedDepartment of Biochemistry and Molecular Biology, Noakhali Science and Technology University, Noakhali, 3814, Bangladesh.
Md Salman ShakilDepartment of Mathematics and Natural Sciences, Brac University, Dhaka, 1212, Bangladesh. salman.shakil@bracu.ac.bd.ORCID http://orcid.org/0000-0002-8922-9500
Md Sakib HossenDepartment of Biochemistry and Molecular Biology, Primeasia University, Banani, Dhaka, 1213, Bangladesh. sakib.hossen@primeasia.edu.bd.ORCID http://orcid.org/0000-0001-7665-0083
Primeasia University · BDJahangirnagar University · BDShri Vile Parle Kelavani Mandal · INBRAC · BDGono University · BDNoakhali Science and Technology University · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dengue fever is a mosquito-borne disease that claims the lives of millions of people around the world. A number of factors like disease's non-specific symptoms, increased viral mutation, growing antiviral drug resistance due to reduced susceptibility, unavailability of an effective vaccine for dengue, weak immunity against the virus, and many more are involved. Dengue belongs to the Flaviviridae family of viruses. The two species of the vector transmitting dengue are Aedes aegypti and Aedes albopictus, with the former one being dominant. Serotypes 2 of dengue fever are spread to the human body and cause severe illness. Recently, dengue has imposed an aggressive effect synergistically with the COVID-19 pandemic. As a result, we concentrated our efforts on finding a potential therapeutic. For this, we chose natural compounds to fight dengue fever, which is currently regarded as successful among many drug therapies. Following this, we started the in silico experiment with 922 plant extracts as lead compounds to fight serotype 2. In this study, we used SwissADME for analyzing ligand drug-likeness, pkCSM for designing an ADMET profile, Autodock vina 4.2 and Swissdock tools for molecular docking, and finally Desmond for molecular dynamics simulation. Ultimately 45 were found effective against the 2'O methyltransferase protein of serotype 2. CHEMBL376820 was found as possible therapeutic candidates for inhibiting methyltransferase protein in this thorough analysis. Nevertheless, more in vitro and in vivo research are required to substantiate their potential therapeutic efficacy.

Indexed as

Antiviral AgentsDengue VirusDrug DiscoveryMolecular Docking SimulationMolecular Dynamics SimulationSerogroupAnimalsComputer SimulationDengueHumansPlant ExtractsAntiviral AgentsPlant Extracts2'O methyltransferase protein of serotype 2Dengue virusMolecular dockingMolecular dynamics simulationNatural compounds

Identifiers

PMID36307631
PMCPMC9616416
OpenAlexW4307508699

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.