Evidence map›Paper›PMID 36307419›Full record

ArticleNature communications2022

A doxycycline- and light-inducible Cre recombinase mouse model for optogenetic genome editing.

Miguel Vizoso, Colin E J Pritchard, Lorenzo Bombardelli, Bram van den Broek, Paul Krimpenfort, Roderick L Beijersbergen, Kees Jalink, Jacco van Rheenen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Miguel VizosoDepartment of Molecular Pathology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, 1066 CX, The Netherlands. m.vizoso.patino@gmail.com.ORCID 0000-0002-9992-2851
Colin E J PritchardMouse Clinic for Cancer and Aging, The Netherlands Cancer Institute, Amsterdam, 1066 CX, The Netherlands.ORCID 0000-0001-7848-9377
Lorenzo BombardelliDivision of Molecular Carcinogenesis and Oncode Institute, Netherlands Cancer Institute, Amsterdam, 1066 CX, The Netherlands.
Bram van den BroekCell Biophysics Group, Department of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0003-1037-907X
Paul KrimpenfortMouse Clinic for Cancer and Aging, The Netherlands Cancer Institute, Amsterdam, 1066 CX, The Netherlands.
Roderick L BeijersbergenDivision of Molecular Carcinogenesis and Oncode Institute, Netherlands Cancer Institute, Amsterdam, 1066 CX, The Netherlands.ORCID 0000-0003-0116-4130
Kees JalinkCell Biophysics Group, Department of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0001-7019-3440
Jacco van RheenenDepartment of Molecular Pathology, Oncode Institute, Netherlands Cancer Institute, Amsterdam, 1066 CX, The Netherlands. j.v.rheenen@nki.nl.ORCID 0000-0001-8175-1647
The Netherlands Cancer Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The experimental need to engineer the genome both in time and space, has led to the development of several photoactivatable Cre recombinase systems. However, the combination of inefficient and non-intentional background recombination has prevented thus far the wide application of these systems in biological and biomedical research. Here, we engineer an optimized photoactivatable Cre recombinase system that we refer to as doxycycline- and light-inducible Cre recombinase (DiLiCre). Following extensive characterization in cancer cell and organoid systems, we generate a DiLiCre mouse line, and illustrated the biological applicability of DiLiCre for light-induced mutagenesis in vivo and positional cell-tracing by intravital microscopy. These experiments illustrate how newly formed HrasV12 mutant cells follow an unnatural movement towards the interfollicular dermis. Together, we develop an efficient photoactivatable Cre recombinase mouse model and illustrate how this model is a powerful genome-editing tool for biological and biomedical research.

Indexed as

DoxycyclineOptogeneticsAnimalsGene EditingIntegrasesMiceMice, Inbred StrainsMice, TransgenicCre recombinaseDoxycyclineIntegrases

Identifiers

PMID36307419
PMCPMC9616875
OpenAlexW4307720272

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.