Evidence map›Paper›PMID 36307418›Full record

ArticleNature communications2022

Prevalence and mechanisms of evolutionary contingency in human influenza H3N2 neuraminidase.

Ruipeng Lei, Timothy J C Tan, Andrea Hernandez Garcia, Yiquan Wang, Meghan Diefenbacher, Chuyun Teo, Gopika Gopan, Zahra Tavakoli Dargani, Qi Wen Teo, Claire S Graham and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Ruipeng LeiDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-4652-3400
Timothy J C TanCenter for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0001-5337-5357
Andrea Hernandez GarciaDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Yiquan WangDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-1954-9808
Meghan DiefenbacherDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Chuyun TeoDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Gopika GopanDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Zahra Tavakoli DarganiDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Qi Wen TeoDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Claire S GrahamDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Christopher B BrookeDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-6815-1193
Satish K NairDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0003-1790-1334
Nicholas C WuDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. nicwu@illinois.edu.ORCID 0000-0002-9078-6697
University of Illinois Urbana-Champaign · US

Funding

Sequence-function relationship of influenza broadly neutralizing antibodiesR01AI167910 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Nicholas C. Wu · 2022 to 2026
$2.5M
High-throughput identification of antibody features for sequence-based epitope predictionDP2AT011966 · NCCIH · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI WU, NICHOLAS C. · 2021 to 2024
$2.4M
MECHANISTIC UNDERSTANDING OF INFLUENZA-HOST INTERACTIONS FROM A ZOONOTIC PERSPECTIVER00AI139445 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI WU, NICHOLAS C. · 2020 to 2021
$492k
NCCIH NIH HHS DP2 AT011966NIAID NIH HHS R00 AI139445NIAID NIH HHS R01 AI167910
6 · The paper itself

Abstract

Neuraminidase (NA) of human influenza H3N2 virus has evolved rapidly and been accumulating mutations for more than half-century. However, biophysical constraints that govern the evolutionary trajectories of NA remain largely elusive. Here, we show that among 70 natural mutations that are present in the NA of a recent human H3N2 strain, >10% are deleterious for an ancestral strain. By mapping the permissive mutations using combinatorial mutagenesis and next-generation sequencing, an extensive epistatic network is revealed. Biophysical and structural analyses further demonstrate that certain epistatic interactions can be explained by non-additive stability effect, which in turn modulates membrane trafficking and enzymatic activity of NA. Additionally, our results suggest that other biophysical mechanisms also contribute to epistasis in NA evolution. Overall, these findings not only provide mechanistic insights into the evolution of human influenza NA and elucidate its sequence-structure-function relationship, but also have important implications for the development of next-generation influenza vaccines.

Indexed as

Influenza, HumanInfluenza VaccinesHumansInfluenza A Virus, H3N2 SubtypeNeuraminidasePrevalenceInfluenza VaccinesNeuraminidase

Identifiers

PMID36307418
PMCPMC9616408
OpenAlexW4307843781

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.