Evidence map›Paper›PMID 36307417›Full record

ArticleNature communications2022

On the fluorescence enhancement of arch neuronal optogenetic reporters.

Leonardo Barneschi, Emanuele Marsili, Laura Pedraza-González, Daniele Padula, Luca De Vico, Danil Kaliakin, Alejandro Blanco-González, Nicolas Ferré, Miquel Huix-Rotllant, Michael Filatov and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Multiple retinal isomerizations during the early phase of the bestrhodopsin photoreaction.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Merocyanines form bacteriorhodopsins with strongly bathochromic absorption maxima.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Leonardo BarneschiDipartimento di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro 2, I-53100, Siena, Italy.
Emanuele MarsiliDipartimento di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro 2, I-53100, Siena, Italy.ORCID 0000-0003-0341-3241
Laura Pedraza-GonzálezDipartimento di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro 2, I-53100, Siena, Italy.ORCID 0000-0002-9806-236X
Daniele PadulaDipartimento di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro 2, I-53100, Siena, Italy.ORCID 0000-0002-7171-7928
Luca De VicoDipartimento di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro 2, I-53100, Siena, Italy.ORCID 0000-0002-2821-5711
Danil KaliakinDepartment of Chemistry, Bowling Green State University, Bowling Green, OH, 43403, USA.ORCID 0000-0002-9354-8248
Alejandro Blanco-GonzálezDepartment of Chemistry, Bowling Green State University, Bowling Green, OH, 43403, USA.ORCID 0000-0001-7379-2588
Nicolas FerréInstitut de Chimie Radicalaire (UMR-7273), Aix-Marseille Université, CNRS, 13397, Marseille, Cedex 20, France.
Miquel Huix-RotllantInstitut de Chimie Radicalaire (UMR-7273), Aix-Marseille Université, CNRS, 13397, Marseille, Cedex 20, France.ORCID 0000-0002-2131-7328
Michael FilatovDepartment of Chemistry, Kyungpook National University, Daegu, 702-701, South Korea.ORCID 0000-0002-1541-739X
Massimo OlivucciDipartimento di Biotecnologie, Chimica e Farmacia, Università di Siena, via A. Moro 2, I-53100, Siena, Italy. olivucci@unisi.it.ORCID 0000-0002-8247-209X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The lack of a theory capable of connecting the amino acid sequence of a light-absorbing protein with its fluorescence brightness is hampering the development of tools for understanding neuronal communications. Here we demonstrate that a theory can be established by constructing quantum chemical models of a set of Archaerhodopsin reporters in their electronically excited state. We found that the experimentally observed increase in fluorescence quantum yield is proportional to the computed decrease in energy difference between the fluorescent state and a nearby photoisomerization channel leading to an exotic diradical of the protein chromophore. This finding will ultimately support the development of technologies for searching novel fluorescent rhodopsin variants and unveil electrostatic changes that make light emission brighter and brighter.

Indexed as

OptogeneticsRhodopsinFluorescenceModels, ChemicalQuantum TheoryStatic ElectricityRhodopsin

Identifiers

PMID36307417
PMCPMC9616920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.