Evidence map›Paper›PMID 36306854›Full record

ArticleThe Science of the total environment2023

Model training periods impact estimation of COVID-19 incidence from wastewater viral loads.

Maria L Daza-Torres, J Cricelio Montesinos-López, Minji Kim, Rachel Olson, C Winston Bess, Lezlie Rueda, Mirjana Susa, Linnea Tucker, Yury E García, Alec J Schmidt and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Science of the total environment, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

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  9. Patterns of SARS-CoV-2 circulation revealed by a nationwide sewage surveillance programme, the Netherlands, August 2020 to February 2022.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Maria L Daza-TorresDepartment of Public Health Sciences, University of California Davis, Davis, CA 95616, United States. Electronic address: mdazatorres@ucdavis.edu.
J Cricelio Montesinos-LópezDepartment of Public Health Sciences, University of California Davis, Davis, CA 95616, United States.
Minji KimDepartment of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California Davis, Davis, CA 95616, United States.
Rachel OlsonDepartment of Civil and Environmental Engineering, University of California Davis, Davis, CA 95616, United States.
C Winston BessDepartment of Civil and Environmental Engineering, University of California Davis, Davis, CA 95616, United States.
Lezlie RuedaDepartment of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California Davis, Davis, CA 95616, United States.
Mirjana SusaDepartment of Public Health Sciences, University of California Davis, Davis, CA 95616, United States.
Linnea TuckerDepartment of Civil and Environmental Engineering, University of California Davis, Davis, CA 95616, United States.
Yury E GarcíaDepartment of Public Health Sciences, University of California Davis, Davis, CA 95616, United States.
Alec J SchmidtDepartment of Public Health Sciences, University of California Davis, Davis, CA 95616, United States.
Colleen C NaughtonDepartment of Civil and Environmental Engineering, University of California Merced, Merced, CA 95343, United States.
Brad H PollockDepartment of Public Health Sciences, University of California Davis, Davis, CA 95616, United States.
Karen ShapiroDepartment of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California Davis, Davis, CA 95616, United States.
Miriam NuñoDepartment of Public Health Sciences, University of California Davis, Davis, CA 95616, United States.
Heather N BischelDepartment of Civil and Environmental Engineering, University of California Davis, Davis, CA 95616, United States. Electronic address: hbischel@ucdavis.edu.
University of California, Davis · USUniversity of California, Merced · US

Funding

AWARD A CONTRACT FOR RADX TECH - CERES TO DEVELOP A WASTEWATER COVID-19 SURVEILLANCE FRAMEWORK DRIVEN BY PUBLIC HEALTH AUTHORITIES AT CITY, COUNTY AND75N92021C00012 · NHLBI · CERES NANOSCIENCES, LLLP · PI DUNLAP, ROSS · 2021 to 2021
$8.2M
NHLBI NIH HHS 75N92021C00012
6 · The paper itself

Abstract

Wastewater-based epidemiology (WBE) has been deployed broadly as an early warning tool for emerging COVID-19 outbreaks. WBE can inform targeted interventions and identify communities with high transmission, enabling quick and effective responses. As the wastewater (WW) becomes an increasingly important indicator for COVID-19 transmission, more robust methods and metrics are needed to guide public health decision-making. This research aimed to develop and implement a mathematical framework to infer incident cases of COVID-19 from SARS-CoV-2 levels measured in WW. We propose a classification scheme to assess the adequacy of model training periods based on clinical testing rates and assess the sensitivity of model predictions to training periods. A testing period is classified as adequate when the rate of change in testing is greater than the rate of change in cases. We present a Bayesian deconvolution and linear regression model to estimate COVID-19 cases from WW data. The effective reproductive number is estimated from reconstructed cases using WW. The proposed modeling framework was applied to three Northern California communities served by distinct WW treatment plants. The results showed that training periods with adequate testing are essential to provide accurate projections of COVID-19 incidence.

Indexed as

COVID-19WastewaterBayes TheoremHumansIncidenceSARS-CoV-2Viral LoadWastewaterBayesian inferenceCOVID–19Public health surveillance: sewageSARS-CoV-2Statistical modelsWastewater-based epidemiology (WBE)

Identifiers

PMID36306854
PMCPMC9597566
OpenAlexW4307566946

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.