Evidence map›Paper›PMID 36306048›Full record

ArticleInternational urology and nephrology2023

COSMC expression as a predictor of remission in IgA nephropathy.

Sebahat Usta Akgul, Cigdem Kekik Cinar, Yasar Caliskan, Erol Demir, Egemen Cebeci, Rasimcan Meral, Sonay Temurhan, Yasemin Ozluk, Filiz Aydin, Fatma Savran Oguz

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Article in International urology and nephrology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
  3. IgA nephropathy: gut microbiome regulates the production of hypoglycosilated IgA1 via the TLR4 signaling pathway.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2024
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Sebahat Usta AkgulDepartment of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey. sebahat.akgul@istanbul.edu.tr.ORCID http://orcid.org/0000-0003-0176-3344
Cigdem Kekik CinarDepartment of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.ORCID http://orcid.org/0000-0003-2098-381X
Yasar CaliskanDivision of Nephrology, Department of Internal Medicine, Istanbul Faculty of Medicine, Istanbul University, Capa/Fatih, Istanbul, Turkey.ORCID http://orcid.org/0000-0003-3816-8047
Erol DemirDivision of Nephrology, Saint Louis University School of Medicine, Saint Louis, MO, USA.ORCID http://orcid.org/0000-0003-0128-5645
Egemen CebeciDepartment of Nephrology, Health Sciences University, Haseki Training and Research Hospital, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-7393-5144
Rasimcan MeralDepartment of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.ORCID http://orcid.org/0000-0003-4026-5049
Sonay TemurhanDepartment of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.ORCID http://orcid.org/0000-0001-9889-9330
Yasemin OzlukDepartment of Pathology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-7191-0488
Filiz AydinDepartment of Medical Biology and Genetics, Demiroglu Science University, Istanbul, Turkey.ORCID http://orcid.org/0000-0003-3703-2981
Fatma Savran OguzDepartment of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-6018-8936
Istanbul University · TRSaint Louis University · USKoç University · TRSağlık Bilimleri Üniversitesi · TR

Funding

Bilimsel Araştirma Projeleri Birimi, Istanbul Üniversitesi 2015-1506
6 · The paper itself

Abstract

purposeThe impact of core 1,3-galactosyltransferase-specific molecular chaperon (COSMC) gene expression and methylation profile on clinical progression of IgA nephropathy (IgAN) is unclear. The aim of this study was to determine the clinical significance and the relation of the COSMC gene expression and methylation pattern with the progression of IgAN.

methodsThirty-nine biopsy-confirmed IgAN patients, 11 healthy relatives and 20 healthy controls were recruited. The COSMC mRNA levels and methylation profile of COSMC gene promoter were measured using the quantitative real-time PCR. The galactose-deficient IgA1 (Gd-IgA1) levels were measured using ELISA in serum and cell culture supernatant. The effect of IL-4 and AZA on COSMC expression and methylation and the correlation of COSMC gene expression and methylation levels with baseline kidney function tests, histology and long-term outcomes were examined.

resultsThe mean COSMC mRNA level was significantly lower, and serum Gd-IgA1 level was higher in IgAN patients compared with the control groups (p < 0.001, and p =  < 0.001, respectively). The COSMC mRNA levels were correlated with intensity of hematuria (r = - 0.41, p = 0.009), serum creatinine level (r = - 0.37, p = 0.002) and eGFR (r = 0.36, p = 0.002). The COSMC methylation levels were correlated with age (r = 0.25, p = 0.04) and baseline eGFR (r = - 0.326, p = 0.006). Twenty IgAN patients (51.3%) reached to complete (5, 12.8%) or partial remission (15, 38.5%) after a median of 34.5 months (IQR, 13.75-71). In multivariable Cox regression analysis, COSMC mRNA expression (adjusted HR (aHR) 1.871, 95% CI 1.287-2.722, p = 0.001) and Oxford T score (aHR 0.355, 95% CI 0.146-0.859, p = 0.022) predicted the remission.

conclusionCOSMC mRNA level is a novel biomarker candidate to predict the remission in IgAN patients.

Indexed as

Glomerulonephritis, IGAHumansImmunoglobulin AMolecular ChaperonesRNA, Messengergalactosyl-deficient IgA1Immunoglobulin AMolecular ChaperonesRNA, MessengerCore 1,3-galactosyltransferase-specific molecular chaperone (COSMC)DNA methylationGalactose-deficient immunoglobulin A1 (Gd-IgA1)IgA nephropathy

Identifiers

PMID36306048
OpenAlexW4307463101

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.