Evidence map›Paper›PMID 36305825›Full record

ArticleNucleic acids research2023

The International Mouse Phenotyping Consortium: comprehensive knockout phenotyping underpinning the study of human disease.

Tudor Groza, Federico Lopez Gomez, Hamed Haseli Mashhadi, Violeta Muñoz-Fuentes, Osman Gunes, Robert Wilson, Pilar Cacheiro, Anthony Frost, Piia Keskivali-Bond, Bora Vardal and 7 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 287 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
287citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

287 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
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  8. Identification of novel genes regulating the development of the palate.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
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  12. Endosomal TPC1-mediated CaProceedings of the National Academy of Sciences of the United States of America · 2026
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227 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Tudor GrozaEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton CB10 1SD, UK.ORCID 0000-0003-2267-8333
Federico Lopez GomezEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton CB10 1SD, UK.
Hamed Haseli MashhadiEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton CB10 1SD, UK.
Violeta Muñoz-FuentesEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton CB10 1SD, UK.
Osman GunesEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton CB10 1SD, UK.
Robert WilsonEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton CB10 1SD, UK.
Pilar CacheiroWilliam Harvey Research Institute, Queen Mary University of London, London EC1M 6BQ, UK.
Anthony FrostMary Lyon Centre at MRC Harwell, Harwell Campus OX11 7UE, UK.
Piia Keskivali-BondMary Lyon Centre at MRC Harwell, Harwell Campus OX11 7UE, UK.
Bora VardalMary Lyon Centre at MRC Harwell, Harwell Campus OX11 7UE, UK.
Aaron McCoyMary Lyon Centre at MRC Harwell, Harwell Campus OX11 7UE, UK.
Tsz Kwan ChengMary Lyon Centre at MRC Harwell, Harwell Campus OX11 7UE, UK.
Luis SantosResearch Data Team, The Turing Institute, 96 Euston Rd, London NW1 2DB, UK.
Sara WellsMary Lyon Centre at MRC Harwell, Harwell Campus OX11 7UE, UK.
Damian SmedleyWilliam Harvey Research Institute, Queen Mary University of London, London EC1M 6BQ, UK.ORCID 0000-0002-5836-9850
Ann-Marie MallonResearch Data Team, The Turing Institute, 96 Euston Rd, London NW1 2DB, UK.
Helen ParkinsonEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton CB10 1SD, UK.

Funding

Mouse Phenotyping Informatics Infrastructure - MP12UM1HG006370 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI Pilar Cacheiro Martinez, Helen Elizabeth Parkinson · 2016 to 2026
$20.4M
Medical Research Council MC_UP_1502/3Medical Research Council MC_UP_2201/1NHGRI NIH HHS UM1 HG006370
6 · The paper itself

Abstract

The International Mouse Phenotyping Consortium (IMPC; https://www.mousephenotype.org/) web portal makes available curated, integrated and analysed knockout mouse phenotyping data generated by the IMPC project consisting of 85M data points and over 95,000 statistically significant phenotype hits mapped to human diseases. The IMPC portal delivers a substantial reference dataset that supports the enrichment of various domain-specific projects and databases, as well as the wider research and clinical community, where the IMPC genotype-phenotype knowledge contributes to the molecular diagnosis of patients affected by rare disorders. Data from 9,000 mouse lines and 750 000 images provides vital resources enabling the interpretation of the ignorome, and advancing our knowledge on mammalian gene function and the mechanisms underlying phenotypes associated with human diseases. The resource is widely integrated and the lines have been used in over 4,600 publications indicating the value of the data and the materials.

Indexed as

Databases, FactualDisease Models, AnimalMice, KnockoutAnimalsHumansMicePhenotype

Identifiers

PMID36305825
PMCPMC9825559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.