Evidence map›Paper›PMID 36305789›Full record

ArticleThe Journal of cell biology2022

Viral protein engagement of GBF1 induces host cell vulnerability through synthetic lethality.

Arti T Navare, Fred D Mast, Jean Paul Olivier, Thierry Bertomeu, Maxwell L Neal, Lindsay N Carpp, Alexis Kaushansky, Jasmin Coulombe-Huntington, Mike Tyers, John D Aitchison

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Synthetic lethality-based prediction of anti-SARS-CoV-2 targets.bioRxiv : the preprint server for biology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Arti T NavareCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA.ORCID 0000-0002-7171-2406
Fred D MastCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA.ORCID 0000-0002-2177-6647
Jean Paul OlivierCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA.
Thierry BertomeuInstitute for Research in Immunology and Cancer, Université de Montréal, Montreal, Quebec, Canada.ORCID 0000-0002-5313-7057
Maxwell L NealCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA.ORCID 0000-0002-2390-6572
Lindsay N CarppCenter for Infectious Disease Research, Seattle, WA.ORCID 0000-0003-0333-5925
Alexis KaushanskyCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA.ORCID 0000-0001-5721-258X
Jasmin Coulombe-HuntingtonInstitute for Research in Immunology and Cancer, Université de Montréal, Montreal, Quebec, Canada.
Mike TyersInstitute for Research in Immunology and Cancer, Université de Montréal, Montreal, Quebec, Canada.ORCID 0000-0002-9713-9994
John D AitchisonCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA.ORCID 0000-0002-9153-6497
Infectious Disease Research Institute · USInstitute for Research in Immunology and Cancer · CACenter for Infectious Disease Research · US

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
BioGRID: An open resource for biological interactions and network analysisR01OD010929 · OD · SINAI HEALTH SYSTEM · PI KARA DOLINSKI, Mike Tyers · 2012 to 2026
$13.9M
Structure-Function Mapping of the Nuclear Pore Complex-RenewalR01GM112108 · NIGMS · ROCKEFELLER UNIVERSITY · PI JOHN D. AITCHISON, MICHAEL P ROUT · 2015 to 2026
$9.1M
Elucidating host phosphosignaling regulation of Plasmodium vivax liver stageR21AI151344 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KAUSHANSKY, ALEXIS · 2020 to 2021
$496k
CIHR FDN-167277NIAID NIH HHS R21 AI151344NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM112108NIH HHS R01 GM112108NIH HHS R01 OD010929
6 · The paper itself

Abstract

Viruses co-opt host proteins to carry out their lifecycle. Repurposed host proteins may thus become functionally compromised; a situation analogous to a loss-of-function mutation. We term such host proteins as viral-induced hypomorphs. Cells bearing cancer driver loss-of-function mutations have successfully been targeted with drugs perturbing proteins encoded by the synthetic lethal (SL) partners of cancer-specific mutations. Similarly, SL interactions of viral-induced hypomorphs can potentially be targeted as host-based antiviral therapeutics. Here, we use GBF1, which supports the infection of many RNA viruses, as a proof-of-concept. GBF1 becomes a hypomorph upon interaction with the poliovirus protein 3A. Screening for SL partners of GBF1 revealed ARF1 as the top hit, disruption of which selectively killed cells that synthesize 3A alone or in the context of a poliovirus replicon. Thus, viral protein interactions can induce hypomorphs that render host cells selectively vulnerable to perturbations that leave uninfected cells otherwise unscathed. Exploiting viral-induced vulnerabilities could lead to broad-spectrum antivirals for many viruses, including SARS-CoV-2.

Indexed as

Guanine Nucleotide Exchange FactorsPoliovirusViral Core ProteinsADP-Ribosylation Factor 1Gene Expression Regulation, ViralHost-Pathogen InteractionsHumansSynthetic Lethal MutationsVirus Replication3A protein, PoliovirusADP-Ribosylation Factor 1ARF1 protein, humanGBF1 protein, humanGuanine Nucleotide Exchange FactorsViral Core Proteins

Identifiers

PMID36305789
PMCPMC9623979
OpenAlexW4307464979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.