Evidence map›Paper›PMID 36305769›Full record

ArticleProtein science : a publication of the Protein Society2022

kinCSM: Using graph-based signatures to predict small molecule CDK2 inhibitors.

Yunzhuo Zhou, Raghad Al-Jarf, Azadeh Alavi, Thanh Binh Nguyen, Carlos H M Rodrigues, Douglas E V Pires, David B Ascher

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  5. Article
  6. AI-Driven Enhancements in Drug Screening and Optimization.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  7. kinCSM: Using graph-based signatures to predict small molecule CDK2 inhibitors.Protein science : a publication of the Protein Society · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yunzhuo ZhouSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.
Raghad Al-JarfStructural Biology and Bioinformatics, Department of Biochemistry, University of Melbourne, Melbourne, Victoria, Australia.
Azadeh AlaviStructural Biology and Bioinformatics, Department of Biochemistry, University of Melbourne, Melbourne, Victoria, Australia.
Thanh Binh NguyenSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.
Carlos H M RodriguesSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.
Douglas E V PiresSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.
David B AscherSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0003-2948-2413
Baker Heart and Diabetes Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein phosphorylation acts as an essential on/off switch in many cellular signaling pathways. This has led to ongoing interest in targeting kinases for therapeutic intervention. Computer-aided drug discovery has been proven a useful and cost-effective approach for facilitating prioritization and enrichment of screening libraries, but limited effort has been devoted providing insights on what makes a potent kinase inhibitor. To fill this gap, here we developed kinCSM, an integrative computational tool capable of accurately identifying potent cyclin-dependent kinase 2 (CDK2) inhibitors, quantitatively predicting CDK2 ligand-kinase inhibition constants (pK

Indexed as

Antineoplastic AgentsProtein Kinase InhibitorsCyclin-Dependent Kinase 2Drug DiscoveryLigandsAntineoplastic AgentsCyclin-Dependent Kinase 2LigandsProtein Kinase Inhibitorsbioactivity predictionCDK2 inhibitorsgraph-based signatureskinase inhibitorsmachine learningsmall molecules

Identifiers

PMID36305769
PMCPMC9597374
OpenAlexW4307256178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.