Evidence map›Paper›PMID 36305590›Full record

ArticleeLife2022

A cryogenic, coincident fluorescence, electron, and ion beam microscope.

Daan B Boltje, Jacob P Hoogenboom, Arjen J Jakobi, Grant J Jensen, Caspar T H Jonker, Max J Kaag, Abraham J Koster, Mart G F Last, Cecilia de Agrela Pinto, Jürgen M Plitzko and 6 more

Abstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Cryogenic light microscopy of vitrified samples with angstrom precision.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Recent advances in correlative cryo-light and electron microscopy.Current opinion in structural biology · 2024
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Daan B BoltjeDepartment of Imaging Physic, Delft University of Technology, Delft, Netherlands.ORCID https://orcid.org/0000-0003-4881-4700
Jacob P HoogenboomDepartment of Imaging Physic, Delft University of Technology, Delft, Netherlands.
Arjen J JakobiKavli Institute of Nanoscience, Delft University of Technology, Delft, Netherlands.ORCID https://orcid.org/0000-0002-7761-2027
Grant J JensenCalifornia Institute of Technology, Pasadena, United States.ORCID https://orcid.org/0000-0003-1556-4864
Caspar T H JonkerDelmic B.V, Delft, Netherlands.
Max J KaagDepartment of Imaging Physic, Delft University of Technology, Delft, Netherlands.
Abraham J KosterDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0003-1717-2549
Mart G F LastDelmic B.V, Delft, Netherlands.ORCID https://orcid.org/0000-0002-3739-8863
Cecilia de Agrela PintoKavli Institute of Nanoscience, Delft University of Technology, Delft, Netherlands.
Jürgen M PlitzkoCryoEM Technology, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID https://orcid.org/0000-0002-6402-8315
Stefan RaunserDepartment of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.ORCID https://orcid.org/0000-0001-9373-3016
Sebastian TackeDepartment of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.
Zhexin WangDepartment of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.ORCID https://orcid.org/0000-0002-4256-1143
Ernest B van der WeeDepartment of Imaging Physic, Delft University of Technology, Delft, Netherlands.ORCID https://orcid.org/0000-0002-0139-4019
Roger WepfCentre for Microscopy and Microanalysis, University of Queensland, Brisbane, Australia.
Sander den HoedtDelmic B.V, Delft, Netherlands.

Funding

Structure and Function of Pathogenesis-Associated Bacterial Structures by Electron CryotomographyR01AI127401 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GRANT J JENSEN · 2016 to 2026
$3.9M
NIAID NIH HHS R01 AI127401
6 · The paper itself

Abstract

Cryogenic electron tomography (cryo-ET) combined with subtomogram averaging, allows in situ visualization and structure determination of macromolecular complexes at subnanometre resolution. Cryogenic focused ion beam (cryo-FIB) micromachining is used to prepare a thin lamella-shaped sample out of a frozen-hydrated cell for cryo-ET imaging, but standard cryo-FIB fabrication is blind to the precise location of the structure or proteins of interest. Fluorescence-guided focused ion beam (FIB) milling at target locations requires multiple sample transfers prone to contamination, and relocation and registration accuracy is often insufficient for 3D targeting. Here, we present in situ fluorescence microscopy-guided FIB fabrication of a frozen-hydrated lamella to address this problem: we built a coincident three-beam cryogenic correlative microscope by retrofitting a compact cryogenic microcooler, custom positioning stage, and an inverted widefield fluorescence microscope (FM) on an existing FIB scanning electron microscope. We show FM controlled targeting at every milling step in the lamella fabrication process, validated with transmission electron microscope tomogram reconstructions of the target regions. The ability to check the lamella during and after the milling process results in a higher success rate in the fabrication process and will increase the throughput of fabrication for lamellae suitable for high-resolution imaging.

Indexed as

Electron Microscope TomographyElectronsCryoelectron MicroscopyIonsMicroscopy, FluorescenceIonscoincident fluorescencecorrelative microscopycryo-electron tomographyelectronFIB-SEMfluorescence microscopyfluoresence targeted millingion beam microscopymolecular biophysicsnonestructural biology

Identifiers

PMID36305590
PMCPMC9714966

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.