Evidence map›Paper›PMID 36303799›Full record

ArticleFrontiers in bioinformatics2021

MycoVarP: Mycobacterium Variant and Drug Resistance Prediction Pipeline for Whole-Genome Sequence Data Analysis.

Sandeep Swargam, Indu Kumari, Amit Kumar, Dibyabhaba Pradhan, Anwar Alam, Harpreet Singh, Anuja Jain, Kangjam Rekha Devi, Vishal Trivedi, Jogesh Sarma and 5 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Genomic characterization of drug-resistantFrontiers in tuberculosis · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 1 country.

Sandeep SwargamDepartment of Biochemical Engineering and Biotechnology, Indian Institute of Technology, Hauz Khas, New Delhi, India.
Indu KumariInflammation Biology and Cell Signalling Lab, Safdarjung Hospital Campus, ICMR National Institute of Pathology, New Delhi, India.
Amit KumarICMR Computational Genomics Centre, Informatics Systems and Research Management (ISRM) Division, Indian Council of Medical Research (ICMR), New Delhi, India.
Dibyabhaba PradhanICMR Computational Genomics Centre, Informatics Systems and Research Management (ISRM) Division, Indian Council of Medical Research (ICMR), New Delhi, India.
Anwar AlamInflammation Biology and Cell Signalling Lab, Safdarjung Hospital Campus, ICMR National Institute of Pathology, New Delhi, India.
Harpreet SinghICMR Computational Genomics Centre, Informatics Systems and Research Management (ISRM) Division, Indian Council of Medical Research (ICMR), New Delhi, India.
Anuja JainSchool of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, India.
Kangjam Rekha DeviICMR-Regional Medical Research Centre, Dibrugarh, India.
Vishal TrivediDepartment of Biosciences and Bioengineering, Indian Institute of Technology-Guwahati, Guwahati, India.
Jogesh SarmaDepartment of Pulmonary Medicine, Guwahati, India.
Mahmud HanifNew Delhi Tuberculosis Centre, New Delhi, India.
Kanwar NarainICMR-Regional Medical Research Centre, Dibrugarh, India.
Nasreen Zafar EhteshamInflammation Biology and Cell Signalling Lab, Safdarjung Hospital Campus, ICMR National Institute of Pathology, New Delhi, India.
Seyed Ehtesham HasnainDepartment of Biochemical Engineering and Biotechnology, Indian Institute of Technology, Hauz Khas, New Delhi, India.
Shandar AhmadSchool of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, India.
Indian Council of Medical Research · INIndian Institute of Technology Guwahati · INJawaharlal Nehru University · INRegional Medical Research Centre · INSafdarjang Hospital · INIndian Institute of Technology Delhi · INNational Institute of Pathology · INNew Delhi Tuberculosis Center · INSharda University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole-genome sequencing (WGS) provides a comprehensive tool to analyze the bacterial genomes for genotype-phenotype correlations, diversity of single-nucleotide variant (SNV), and their evolution and transmission. Several online pipelines and standalone tools are available for WGS analysis of

Indexed as

drug resistancedrug susceptiblelineage predictionMDR-TBMycobacterium tuberculosisPE-PPE/PGRS familysingle-nucleotide variants

Identifiers

PMID36303799
PMCPMC9580932
OpenAlexW4281749644

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.