Evidence map›Paper›PMID 36302771›Full record

ArticleNature communications2022

Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack.

Shuang Yang, Giorgos Hiotis, Yi Wang, Junjian Chen, Jia-Huai Wang, Mikyung Kim, Ellis L Reinherz, Thomas Walz

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Structural basis of membrane engagement and polyreactivity control in HIV-1 MPER broadly neutralizing antibodies.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  16. Nanodiscs for the study of membrane proteins.Current opinion in structural biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shuang Yang *Laboratory of Molecular Electron Microscopy, The Rockefeller University, New York, NY, USA.
Giorgos Hiotis *Laboratory of Molecular Electron Microscopy, The Rockefeller University, New York, NY, USA.
Yi WangLaboratory of Immunobiology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Junjian ChenLaboratory of Immunobiology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Jia-Huai WangLaboratory of Immunobiology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Mikyung KimLaboratory of Immunobiology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Ellis L ReinherzLaboratory of Immunobiology, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. ellis_reinherz@dfci.harvard.edu.ORCID 0000-0003-1048-5526
Thomas WalzLaboratory of Molecular Electron Microscopy, The Rockefeller University, New York, NY, USA. twalz@rockefeller.edu.ORCID 0000-0003-2606-2835
Harvard University · USRockefeller University · USTri-Institutional PhD Program in Chemical Biology · US

Funding

Targeting Immunogenicity to the MPER Hinge and C-helix for BNAb ElicitationP01AI126901 · NIAID · DANA-FARBER CANCER INST · PI REINHERZ, ELLIS L · 2016 to 2020
$9.2M
NIAID NIH HHS P01 AI126901
6 · The paper itself

Abstract

Vaccines targeting HIV-1's gp160 spike protein are stymied by high viral mutation rates and structural chicanery. gp160's membrane-proximal external region (MPER) is the target of naturally arising broadly neutralizing antibodies (bnAbs), yet MPER-based vaccines fail to generate bnAbs. Here, nanodisc-embedded spike protein was investigated by cryo-electron microscopy and molecular-dynamics simulations, revealing spontaneous ectodomain tilting that creates vulnerability for HIV-1. While each MPER protomer radiates centrally towards the three-fold axis contributing to a membrane-associated tripod structure that is occluded in the upright spike, tilting provides access to the opposing MPER. Structures of spike proteins with bound 4E10 bnAb Fabs reveal that the antibody binds exposed MPER, thereby altering MPER dynamics, modifying average ectodomain tilt, and imposing strain on the viral membrane and the spike's transmembrane segments, resulting in the abrogation of membrane fusion and informing future vaccine development.

Indexed as

AIDS VaccinesHIV-1Antibodies, NeutralizingBroadly Neutralizing AntibodiesCryoelectron MicroscopyHIV AntibodiesHIV Envelope Protein gp41Spike Glycoprotein, CoronavirusAIDS VaccinesAntibodies, NeutralizingBroadly Neutralizing AntibodiesHIV AntibodiesHIV Envelope Protein gp41Spike Glycoprotein, Coronavirus

Identifiers

PMID36302771
PMCPMC9610346
OpenAlexW4307776849

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.