Evidence map›Paper›PMID 36302706›Full record

ArticleBiological psychiatry2023

Diurnal Alterations in Gene Expression Across Striatal Subregions in Psychosis.

Kyle D Ketchesin, Wei Zong, Mariah A Hildebrand, Madeline R Scott, Marianne L Seney, Kelly M Cahill, Vaishnavi G Shankar, Jill R Glausier, David A Lewis, George C Tseng and 1 more

Open access · greenAbstract read
In one paragraph

Article in Biological psychiatry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  8. Review
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  11. Review
  12. Comparative rhythmic transcriptome profiling of human and mouse striatal subregions.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Article
  13. Review
  14. Bipolar Disorder.Current opinion in neurobiology · 2023
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Kyle D KetchesinTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Wei ZongDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, Pennsylvania.
Mariah A HildebrandTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Madeline R ScottTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Marianne L SeneyTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Kelly M CahillDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, Pennsylvania.
Vaishnavi G ShankarTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Jill R GlausierTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
David A LewisTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
George C TsengDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, Pennsylvania. Electronic address: ctseng@pitt.edu.
Colleen A McClungTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania. Electronic address: mcclungca@upmc.edu.
University of Pittsburgh · US

Funding

Subject Management and BiobankingP50DA046346 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PETER L FRANZEN · 2020 to 2026
$23.4M
Identification of molecular rhythm changes in postmortem tissue from individuals with psychiatric illness. R01MH111601 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Colleen A McClung, Marianne L Seney · 2018 to 2026
$5.5M
Selective HDAC inhibition and therapeutic target genes: Identification of novel treatments for Bipolar DisorderR01MH106460 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MCCLUNG, COLLEEN A · 2016 to 2024
$3.6M
Role of DNA methylation in regulating striatal molecular rhythm alterations in depressionK01MH128763 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KETCHESIN, KYLE · 2021 to 2024
$680k
Role of Molecular Rhythms in the Nucleus Accumbens and Dorsal Striatum in SchizophreniaF32MH120907 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KETCHESIN, KYLE · 2019 to 2019
$62k
NIDA NIH HHS P50 DA046346NIMH NIH HHS F32 MH120907NIMH NIH HHS K01 MH128763NIMH NIH HHS R01 MH106460NIMH NIH HHS R01 MH111601
6 · The paper itself

Abstract

backgroundPsychosis is a defining feature of schizophrenia and highly prevalent in bipolar disorder. Notably, individuals with these illnesses also have major disruptions in sleep and circadian rhythms, and disturbances of sleep and circadian rhythms can precipitate or exacerbate psychotic symptoms. Psychosis is associated with the striatum, though to our knowledge, no study to date has directly measured molecular rhythms and determined how they are altered in the striatum of subjects with psychosis.

methodsWe performed RNA sequencing and both differential expression and rhythmicity analyses to investigate diurnal alterations in gene expression in human postmortem striatal subregions (nucleus accumbens, caudate, and putamen) in subjects with psychosis (n = 36) relative to unaffected comparison subjects (n = 36).

resultsAcross regions, we found differential expression of immune-related transcripts and a substantial loss of rhythmicity in core circadian clock genes in subjects with psychosis. In the nucleus accumbens, mitochondrial-related transcripts had decreased expression in subjects with psychosis, but only in those who died at night. Additionally, we found a loss of rhythmicity in small nucleolar RNAs and a gain of rhythmicity in glutamatergic signaling in the nucleus accumbens of subjects with psychosis. Between-region comparisons indicated that rhythmicity in the caudate and putamen was far more similar in subjects with psychosis than in matched comparison subjects.

conclusionsTogether, these findings reveal differential and rhythmic gene expression differences across the striatum that may contribute to striatal dysfunction and psychosis in psychotic disorders.

Indexed as

Psychotic DisordersCircadian RhythmCorpus StriatumGene ExpressionHumansPutamenCircadian rhythmsHuman postmortemPsychosisRNA sequencingSchizophreniaStriatum

Identifiers

PMID36302706
PMCPMC10411997
OpenAlexW4293162934

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.