Evidence map›Paper›PMID 36300527›Full record

ArticleJournal of experimental botany2023

Metabolic link between auxin production and specialized metabolites in Sorghum bicolor.

Veronica C Perez, Ru Dai, Breanna Tomiczek, Jorrel Mendoza, Emily S A Wolf, Alexander Grenning, Wilfred Vermerris, Anna K Block, Jeongim Kim

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Veronica C PerezPlant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32611, USA.
Ru DaiHorticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA.
Breanna TomiczekDepartment of Chemistry, University of Florida, Gainesville, FL 32611, USA.
Jorrel MendozaChemistry Research Unit, Center for Medical, Agricultural and Veterinary Entomology, U.S. Department of Agriculture-Agricultural Research Service, Gainesville, FL 32608, USA.
Emily S A WolfPlant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32611, USA.
Alexander GrenningDepartment of Chemistry, University of Florida, Gainesville, FL 32611, USA.
Wilfred VermerrisPlant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32611, USA.
Anna K BlockChemistry Research Unit, Center for Medical, Agricultural and Veterinary Entomology, U.S. Department of Agriculture-Agricultural Research Service, Gainesville, FL 32608, USA.
Jeongim KimPlant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-5618-3948
University of Florida · USAgricultural Research Service · US

Funding

New opportunities for the Cope rearrangement: methods, modular synthesis, and applications in drug discoveryR35GM137893 · NIGMS · UNIVERSITY OF MINNESOTA · PI GRENNING, ALEXANDER JAMES · 2020 to 2024
$1.8M
NIGMS NIH HHS R35 GM137893
6 · The paper itself

Abstract

Aldoximes are amino acid derivatives that serve as intermediates for numerous specialized metabolites including cyanogenic glycosides, glucosinolates, and auxins. Aldoxime formation is mainly catalyzed by cytochrome P450 monooxygenases of the 79 family (CYP79s) that can have broad or narrow substrate specificity. Except for SbCYP79A1, aldoxime biosynthetic enzymes in the cereal sorghum (Sorghum bicolor) have not been characterized. This study identified nine CYP79-encoding genes in the genome of sorghum. A phylogenetic analysis of CYP79 showed that SbCYP79A61 formed a subclade with maize ZmCYP79A61, previously characterized to be involved in aldoxime biosynthesis. Functional characterization of this sorghum enzyme using transient expression in Nicotiana benthamiana and stable overexpression in Arabidopsis thaliana revealed that SbCYP79A61 catalyzes the production of phenylacetaldoxime (PAOx) from phenylalanine but, unlike the maize enzyme, displays no detectable activity against tryptophan. Additionally, targeted metabolite analysis after stable isotope feeding assays revealed that PAOx can serve as a precursor of phenylacetic acid (PAA) in sorghum and identified benzyl cyanide as an intermediate of PAOx-derived PAA biosynthesis in both sorghum and maize. Taken together, our results demonstrate that SbCYP79A61 produces PAOx in sorghum and may serve in the biosynthesis of other nitrogen-containing phenylalanine-derived metabolites involved in mediating biotic and abiotic stresses.

Indexed as

ArabidopsisSorghumAmino Acid SequenceIndoleacetic AcidsOximesPhenylalaninePhylogenyPlant Proteinsacetaldehyde oximeIndoleacetic AcidsOximesphenylacetaldoximePhenylalaninePlant ProteinsAldoximesauxin biosynthesisbenzyl cyanidePAAsorghum

Identifiers

PMID36300527
PMCPMC9786853
OpenAlexW4307430391

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.