Evidence map›Paper›PMID 36300121›Full record

ArticleFrontiers in immunology2022

Identification of N7-methylguanosine related subtypes and construction of prognostic model in gastric cancer.

Xiaoxiao Li, Hao Dong, Ling Chen, Yujie Wang, Zhibin Hao, Yingyi Zhang, Yuan Jiao, Zhiyue Zhao, Xiaobo Peng, Xianbao Zhan

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 42 citations in OpenAlex.

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  11. The mCancers · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Xiaoxiao LiDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Hao DongDepartment of Gastrointestinal Nutrition and Hernia Surgery, The Second Hospital of Jilin University, Changchun, China.
Ling ChenDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Yujie WangDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Zhibin HaoDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Yingyi ZhangDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Yuan JiaoDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Zhiyue ZhaoDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Xiaobo PengDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Xianbao ZhanDepartment of Oncology, Changhai Hospital, Naval Military Medical University, Shanghai, China.
Second Military Medical University · CNChanghai Hospital · CNSecond Affiliated Hospital of Jilin University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: N Materials and Methods: In this study, SNVs (single nucleotide variations), CNVs (copy number variations), and methylation of m7G-related genes (m7GRGs) were analyzed. The relationship between them and the expression of m7GRGs and prognosis of GC patients was explored. Based on 13 prognostic-related m7GRGs, 567 GC samples were classified into three subtypes using the ConsensusClusterPlus package. we compared survival status, clinical traits, immune cell infiltration, immune checkpoints, tumor microenvironment (TME), tumor immune dysfunction and exclusion (TIDE), and potential biological pathways among the three subtypes. Then, patients were again grouped into different genetic subtypes based on the DEGs among the three subtypes. In addition, a prognostic m7GRG_Score was constructed using five risk genes applicable to patients of any age, gender and stage. We also assessed tumor mutational burden (TMB), microsatellite instability (MSI), cancer stem cell (CSC) index, sensitivity of antineoplastic drugs, efficacy of anti-PD-1 and anti-CTLA4 immunotherapy between high and low m7GRG_Score groups. Finally, we established a nomogram based on m7GRG_Score and tumor stage to enhance the clinical application of the model. miRNAs and lncRNAs that could regulate expression of risk genes were searched. Results: SNVs, CNVs, and methylation of m7GRGs were associated with m7GRGs expression. However, they did not significantly affect the survival of GC patients. Our results also confirmed that patients in subtypes B and C and low m7GRG_Score groups had longer survival time, better clinical stage, more immune cell infiltration, fewer immune escape and dysfunction compared to subtype A and high m7GRG_Score groups. A low m7GRG_score was featured with increased microsatellite instability-high (MSI-H), TMB, and efficacy of immunotherapy. Conclusion: The m7GRG_Score model may become a beneficial tool for predicting prognosis and guiding personalized treatment in GC patients. These findings will improve our knowledge of m7G in GC and provide new methods for more effective treatment strategies.

Indexed as

MicroRNAsRNA, Long NoncodingStomach NeoplasmsBiomarkers, TumorDNA Copy Number VariationsGuanosineHumansMicrosatellite InstabilityNucleotidesPrognosisRNA, MessengerTumor Microenvironment8-methylguanosineBiomarkers, TumorGuanosineMicroRNAsNucleotidesRNA, Long NoncodingRNA, Messengergastric cancerimmune infiltrationimmunotherapymolecule subtypesN7-methylguanosineprognosistumor microenvironment

Identifiers

PMID36300121
PMCPMC9589367
OpenAlexW4304161120

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.