Evidence map›Paper›PMID 36299428›Full record

ArticlebioRxiv : the preprint server for biology2022

Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis.

Thomas Kehrer, Anastasija Cupic, Chengjin Ye, Soner Yildiz, Mehdi Bouhhadou, Nicholas A Crossland, Erika Barrall, Phillip Cohen, Anna Tseng, Tolga Çağatay and 29 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. The evolution of SARS-CoV-2.Nature reviews. Microbiology · 2023
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

39 authors.

Anastasija Cupic
Chengjin Ye
Soner Yildiz
Mehdi Bouhhadou
Nicholas A CrosslandORCID 0000-0003-3873-9188
Erika Barrall
Phillip Cohen
Anna Tseng
Tolga Çağatay
Raveen Rathnasinghe
Daniel Flores
Sonia Jangra
Fahmida Alam
Nacho Mena
Sadaf Aslam
Anjali Saqi
Arturo Marin
Magdalena Rutkowska
Manisha R Ummadi
Giuseppe Pisanelli
R Blake Richardson
Ethan C Veit
Jacqueline M Fabius
Margaret Soucheray
Benjamin J Polacco
Matthew J Evans
Danielle L Swaney
Ana S Gonzalez-ReicheORCID 0000-0003-3583-4497
Emilia M SordilloORCID 0000-0001-7787-3051
Viviana Simon
Lorena Zuliani-Alvarez
Beatriz M A Fontoura
Brad R Rosenberg
Luis Martinez-Sobrido
Adolfo García-SastreORCID 0000-0002-6551-1827

Funding

Vulnerability of SARS- CoV-2 Infection in Lung Cancer Based on Serological Antibody AnalysesU54CA260560 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHYR, YU · 2020 to 2024
$10.0M
NCI NIH HHS U54 CA260560
6 · The paper itself

Abstract

We and others have previously shown that the SARS-CoV-2 accessory protein ORF6 is a powerful antagonist of the interferon (IFN) signaling pathway by directly interacting with Nup98-Rae1 at the nuclear pore complex (NPC) and disrupting bidirectional nucleo-cytoplasmic trafficking. In this study, we further assessed the role of ORF6 during infection using recombinant SARS-CoV-2 viruses carrying either a deletion or a well characterized M58R loss-of-function mutation in ORF6. We show that ORF6 plays a key role in the antagonism of IFN signaling and in viral pathogenesis by interfering with karyopherin(importin)-mediated nuclear import during SARS-CoV-2 infection both ONE SENTENCE SUMMARY: SARS-CoV-2 ORF6 subverts bidirectional nucleo-cytoplasmic trafficking to inhibit host gene expression and contribute to viral pathogenesis.

Identifiers

PMID36299428
PMCPMC9603824

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.