Evidence map›Paper›PMID 36298862›Full record

ArticleViruses2022

Phylogenetic Characterization of HIV-1 Sub-Subtype A1 in Karachi, Pakistan.

Uroosa Tariq, Jamirah Nazziwa, Sviataslau Sasinovich, Sharaf Ali Shah, Sadaf Naeem, Syed Hani Abidi, Joakim Esbjörnsson

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 4 countries.

Uroosa TariqDepartment of Biological and Biomedical Sciences, Aga Khan University, Karachi 74800, Pakistan.
Jamirah NazziwaDepartment of Translational Medicine, Lund University, SE-221 00 Lund, Sweden.ORCID 0000-0001-9029-7976
Sviataslau SasinovichDepartment of Translational Medicine, Lund University, SE-221 00 Lund, Sweden.
Sharaf Ali ShahBridge Consultants Foundation, Karachi 75100, Pakistan.
Sadaf NaeemDepartment of Biochemistry, University of Karachi, Karachi 75270, Pakistan.
Syed Hani AbidiDepartment of Biological and Biomedical Sciences, Aga Khan University, Karachi 74800, Pakistan.ORCID 0000-0001-9497-0902
Joakim EsbjörnssonDepartment of Translational Medicine, Lund University, SE-221 00 Lund, Sweden.
Lund University · SEAga Khan University · PKBridge Consultants Foundation · PKUniversity of Karachi · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

(1) Background: HIV-1 sub-subtype A1 is common in parts of Africa, Russia, former Soviet Union countries, and Eastern Europe. In Pakistan, sub-subtype A1 is the predominant HIV-1 subtype. Preliminary evidence suggests that distinct strains of HIV-1 sub-subtype A1 are circulating in Pakistan; however, an in-depth molecular phylogenetic characterization of HIV-1 sub-subtype A1 strains in Pakistan have not been presented. We performed a detailed characterization of the HIV-1 sub-subtype A1 epidemic in Pakistan using state-of-the-art molecular epidemiology and phylodynamics. (2) Methods: A total of 143 HIV-1 sub-subtype A1

Indexed as

HIV-1HIV InfectionsAmino AcidsEpitopes, T-LymphocyteGene Products, gagHumansKenyaPakistanPhylogenyAmino AcidsEpitopes, T-LymphocyteGene Products, gagepitopesgagHIV-1Pakistanphylodynamicsphylogeneticssub-subtype A1

Identifiers

PMID36298862
PMCPMC9611109
OpenAlexW4306969917

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.