Evidence map›Paper›PMID 36298827›Full record

ArticleViruses2022

The Network of Interactions between the Porcine Epidemic Diarrhea Virus Nucleocapsid and Host Cellular Proteins.

Jianwei Zhou, Yonghui Qiu, Jie Zhao, Yongxia Wang, Ning Zhu, Dedong Wang, Yongqiu Cui, Jinshuo Guo, Tong Sun, Ying Ji and 6 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Jianwei ZhouCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Yonghui QiuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Jie ZhaoCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Yongxia WangCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Ning ZhuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Dedong WangCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Yongqiu CuiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0003-3459-7047
Jinshuo GuoCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Tong SunCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Ying JiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Zhi WuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Penghui ZengCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Jingyi LiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Xufei FengCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Lei HouCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Jue LiuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Yangzhou University · CNAnhui Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Host-virus protein interactions are critical for intracellular viral propagation. Understanding the interactions between cellular and viral proteins may help us develop new antiviral strategies. Porcine epidemic diarrhea virus (PEDV) is a highly contagious coronavirus that causes severe damage to the global swine industry. Here, we employed co-immunoprecipitation and liquid chromatography-mass spectrometry to characterize 426 unique PEDV nucleocapsid (N) protein-binding proteins in infected Vero cells. A protein-protein interaction network (PPI) was created, and gene ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) database analyses revealed that the PEDV N-bound proteins belong to different cellular pathways, such as nucleic acid binding, ribonucleoprotein complex binding, RNA methyltransferase, and polymerase activities. Interactions of the PEDV N protein with 11 putative proteins: tripartite motif containing 21, DEAD-box RNA helicase 24, G3BP stress granule assembly factor 1, heat shock protein family A member 8, heat shock protein 90 alpha family class B member 1, YTH domain containing 1, nucleolin, Y-box binding protein 1, vimentin, heterogeneous nuclear ribonucleoprotein A2/B1, and karyopherin subunit alpha 1, were further confirmed by in vitro co-immunoprecipitation assay. In summary, studying an interaction network can facilitate the identification of antiviral therapeutic strategies and novel targets for PEDV infection.

Indexed as

Coronavirus InfectionsNucleic AcidsPorcine epidemic diarrhea virusSwine DiseasesAnimalsAntiviral AgentsChlorocebus aethiopsDEAD-box RNA HelicasesHeat-Shock ProteinsHeterogeneous-Nuclear RibonucleoproteinsKaryopherinsMethyltransferasesNucleocapsidNucleocapsid ProteinsRibonucleoproteinsRNAAntiviral AgentsDEAD-box RNA HelicasesHeat-Shock ProteinsHeterogeneous-Nuclear RibonucleoproteinsKaryopherinsMethyltransferasesNucleic AcidsNucleocapsid ProteinsRibonucleoproteinsRNAVimentinViral ProteinsGO analysisinteraction networkKEGG analysisnucleocapsid proteinporcine epidemic diarrhea virus

Identifiers

PMID36298827
PMCPMC9611260
OpenAlexW4306404239

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.