Evidence map›Paper›PMID 36298722›Full record

ArticleViruses2022

Detection of New H5N1 High Pathogenicity Avian Influenza Viruses in Winter 2021-2022 in the Far East, Which Are Genetically Close to Those in Europe.

Norikazu Isoda, Manabu Onuma, Takahiro Hiono, Ivan Sobolev, Hew Yik Lim, Kei Nabeshima, Hisako Honjyo, Misako Yokoyama, Alexander Shestopalov, Yoshihiro Sakoda

Abstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Norikazu IsodaLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-ku, Sapporo 060-0818, Hokkaido, Japan.ORCID 0000-0003-3480-988X
Manabu OnumaEcological Risk Assessment and Control Section for Environmental Biology and Ecosystem, Biology Division, National Institute for Environmental Studies, Onogawa 16-2, Tsukuba 305-8506, Ibaraki, Japan.
Takahiro HionoLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-ku, Sapporo 060-0818, Hokkaido, Japan.ORCID 0000-0001-8897-3592
Ivan SobolevInstitute of Virology of the Federal Research Center of Fundamental and Translational Medicine, Novosibirsk State University, Bild 2, Timakova St., Novosibirsk 630117, Russia.
Hew Yik LimLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-ku, Sapporo 060-0818, Hokkaido, Japan.
Kei NabeshimaEcological Risk Assessment and Control Section for Environmental Biology and Ecosystem, Biology Division, National Institute for Environmental Studies, Onogawa 16-2, Tsukuba 305-8506, Ibaraki, Japan.
Hisako HonjyoEcological Risk Assessment and Control Section for Environmental Biology and Ecosystem, Biology Division, National Institute for Environmental Studies, Onogawa 16-2, Tsukuba 305-8506, Ibaraki, Japan.
Misako YokoyamaEcological Risk Assessment and Control Section for Environmental Biology and Ecosystem, Biology Division, National Institute for Environmental Studies, Onogawa 16-2, Tsukuba 305-8506, Ibaraki, Japan.
Alexander ShestopalovInstitute of Virology of the Federal Research Center of Fundamental and Translational Medicine, Novosibirsk State University, Bild 2, Timakova St., Novosibirsk 630117, Russia.
Yoshihiro SakodaLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Kita 18, Nishi 9, Kita-ku, Sapporo 060-0818, Hokkaido, Japan.ORCID 0000-0001-7021-1688

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many high pathogenicity avian influenza (HPAI) cases in wild birds due to H5N1 HPAI virus (HPAIV) infection were reported in northern Japan in the winter of 2021-2022. To investigate the epidemiology of HPAIVs brought to Japan from surrounding areas, a genetic analysis of H5 HPAIVs isolated in northern Japan was performed, and the pathogenicity of the HPAIV in chickens was assessed by experimental infection. Based on the genetic analysis of the hemagglutinin gene, pathogenic viruses detected in northern Japan as well as one in Sakhalin, the eastern part of Russia, were classified into the same subgroup as viruses prevalent in Europe in the same season but distinct from those circulating in Asia in winter 2020-2021. High identities of all eight segment sequences of A/crow/Hokkaido/0103B065/2022 (H5N1) (Crow/Hok), the representative isolates in northern Japan in 2022, to European isolates in the same season could also certify the unlikeliness of causing gene reassortment between H5 HPAIVs and viruses locally circulating in Asia. According to intranasal challenge results in six-week-old chickens, 50% of the chicken-lethal dose of Crow/Hok was calculated as 10

Indexed as

Influenza A virusInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsAnimalsAnimals, WildAsia, EasternChickensEuropeHemagglutininsPhylogenySeasonsVirulenceHemagglutininsbird migrationgenetic profileH5N1high pathogenicity avian influenzawild birds

Identifiers

PMID36298722
PMCPMC9606862

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.