Evidence map›Paper›PMID 36298705›Full record

ArticleViruses2022

A Transcriptomics-Based Bioinformatics Approach for Identification and In Vitro Screening of FDA-Approved Drugs for Repurposing against Dengue Virus-2.

Madhura Punekar, Bhagyashri Kasabe, Poonam Patil, Mahadeo B Kakade, Deepti Parashar, Kalichamy Alagarasu, Sarah Cherian

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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  11. Drug repurposing approach against chikungunya virus: anFrontiers in cellular and infection microbiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Madhura PunekarDengue & Chikungunya Group, ICMR-National Institute of Virology, 20-A, Dr Ambedkar Road, Pune 411001, Maharashtra, India.ORCID 0000-0001-7557-9289
Bhagyashri KasabeBioinformatics Group, ICMR-National Institute of Virology, 20-A, Dr Ambedkar Road, Pune 411001, Maharashtra, India.ORCID 0000-0003-0380-7494
Poonam PatilDengue & Chikungunya Group, ICMR-National Institute of Virology, 20-A, Dr Ambedkar Road, Pune 411001, Maharashtra, India.
Mahadeo B KakadeDengue & Chikungunya Group, ICMR-National Institute of Virology, 20-A, Dr Ambedkar Road, Pune 411001, Maharashtra, India.
Deepti ParasharDengue & Chikungunya Group, ICMR-National Institute of Virology, 20-A, Dr Ambedkar Road, Pune 411001, Maharashtra, India.ORCID 0000-0003-2688-3684
Kalichamy AlagarasuDengue & Chikungunya Group, ICMR-National Institute of Virology, 20-A, Dr Ambedkar Road, Pune 411001, Maharashtra, India.ORCID 0000-0003-1401-8589
Sarah CherianBioinformatics Group, ICMR-National Institute of Virology, 20-A, Dr Ambedkar Road, Pune 411001, Maharashtra, India.
ICMR-National Institute of Virology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rising incidence of dengue virus (DENV) infections in the tropical and sub-tropical regions of the world emphasizes the need to identify effective therapeutic drugs against the disease. Repurposing of drugs has emerged as a novel concept to combat pathogens. In this study, we employed a transcriptomics-based bioinformatics approach for drug identification against DENV. Gene expression omnibus datasets from patients with different grades of dengue disease severity and healthy controls were used to identify differentially expressed genes in dengue cases, which were then applied to the query tool of Connectivity Map to identify the inverse gene-disease-drug relationship. A total of sixteen identified drugs were investigated for their prophylactic, virucidal, and therapeutic effects against DENV. Focus-forming unit assay and quantitative RT-PCR were used to evaluate the antiviral activity. Results revealed that five compounds, viz., resveratrol, doxorubicin, lomibuvir, elvitegravir, and enalaprilat, have significant anti-DENV activity. Further, molecular docking studies showed that these drugs can interact with a variety of protein targets of DENV, including the glycoprotein, the NS5 RdRp, NS2B-NS3 protease, and NS5 methyltransferase The in vitro and in silico results, therefore, reveal that these drugs have the ability to decrease DENV-2 production, suggesting that these drugs or their derivatives could be attempted as therapeutic agents against DENV infections.

Indexed as

DengueDengue VirusAntiviral AgentsComputational BiologyDoxorubicinDrug RepositioningEnalaprilatHumansMethyltransferasesMolecular Docking SimulationPeptide HydrolasesResveratrolRNA-Dependent RNA PolymeraseTranscriptomeViral Nonstructural ProteinsAntiviral AgentsDoxorubicinEnalaprilatMethyltransferasesPeptide HydrolasesResveratrolRNA-Dependent RNA PolymeraseViral Nonstructural Proteinsantiviral therapydengue feverDENV-2FDA-approved drugsrepurposing drugs

Identifiers

PMID36298705
PMCPMC9609047
OpenAlexW4298145289

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.