Evidence map›Paper›PMID 36298681›Full record

ArticleViruses2022

Recent Emergence of Bovine Coronavirus Variants with Mutations in the Hemagglutinin-Esterase Receptor Binding Domain in U.S. Cattle.

Aspen M Workman, Tara G McDaneld, Gregory P Harhay, Subha Das, John Dustin Loy, Benjamin M Hause

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

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  16. Two bovine hepacivirus genome sequences from U.S. cattle.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Aspen M WorkmanUnited States Department of Agriculture (USDA) Agricultural Research Service (ARS), US Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE 68933, USA.ORCID 0000-0003-2852-3519
Tara G McDaneldUnited States Department of Agriculture (USDA) Agricultural Research Service (ARS), US Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE 68933, USA.
Gregory P HarhayUnited States Department of Agriculture (USDA) Agricultural Research Service (ARS), US Meat Animal Research Center (USMARC), State Spur 18D, Clay Center, NE 68933, USA.
Subha DasVeterinary & Biomedical Sciences, South Dakota State University, Brookings, SD 57007, USA.
John Dustin LoyNebraska Veterinary Diagnostic Center, School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, 4040 East Campus Loop N, Lincoln, NE 68503, USA.ORCID 0000-0002-7282-096X
Benjamin M HauseVeterinary & Biomedical Sciences, South Dakota State University, Brookings, SD 57007, USA.ORCID 0000-0003-2463-4676
Agricultural Research Service · USSouth Dakota State University · USUniversity of Nebraska–Lincoln · US

Funding

Surveillance of wildlife and livestock for novel and emerging coronavirusesR21AI162594 · NIAID · SOUTH DAKOTA STATE UNIVERSITY · PI NELSON, ERIC A · 2021 to 2022
$408k
NIAID NIH HHS 1R21AI162594-01NIAID NIH HHS R21 AI162594
6 · The paper itself

Abstract

Bovine coronavirus (BCoV) has spilled over to many species, including humans, where the host range variant coronavirus OC43 is endemic. The balance of the opposing activities of the surface spike (S) and hemagglutinin-esterase (HE) glycoproteins controls BCoV avidity, which is critical for interspecies transmission and host adaptation. Here, 78 genomes were sequenced directly from clinical samples collected between 2013 and 2022 from cattle in 12 states, primarily in the Midwestern U.S. Relatively little genetic diversity was observed, with genomes having >98% nucleotide identity. Eleven isolates collected between 2020 and 2022 from four states (Nebraska, Colorado, California, and Wisconsin) contained a 12 nucleotide insertion in the receptor-binding domain (RBD) of the HE gene similar to one recently reported in China, and a single genome from Nebraska collected in 2020 contained a novel 12 nucleotide deletion in the HE gene RBD. Isogenic HE proteins containing either the insertion or deletion in the HE RBD maintained esterase activity and could bind bovine submaxillary mucin, a substrate enriched in the receptor 9-O-acetylated-sialic acid, despite modeling that predicted structural changes in the HE R3 loop critical for receptor binding. The emergence of BCoV with structural variants in the RBD raises the possibility of further interspecies transmission.

Indexed as

Cattle DiseasesCoronavirus, BovineCoronavirus InfectionsAnimalsCattleEsterasesGlycoproteinsHemagglutininsHumansMutationN-Acetylneuraminic AcidNucleotidesSpike Glycoprotein, CoronavirusEsterasesGlycoproteinsHemagglutininsN-Acetylneuraminic AcidNucleotidesSpike Glycoprotein, Coronavirusbovine coronavirusbovine respiratory diseasecalf diarrheahemagglutinin-esterasevariant

Identifiers

PMID36298681
PMCPMC9607061
OpenAlexW4298002652

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.