Evidence map›Paper›PMID 36298597›Full record

ArticleVaccines2022

Immunoinformatics Approach to Design Multi-Epitope-Based Vaccine against Machupo Virus Taking Viral Nucleocapsid as a Potential Candidate.

Muhammad Naveed, Syeda Izma Makhdoom, Urooj Ali, Khizra Jabeen, Tariq Aziz, Ayaz Ali Khan, Sumbal Jamil, Muhammad Shahzad, Metab Alharbi, Abdulrahman Alshammari

Open access · goldAbstract read
In one paragraph

Article in Vaccines, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Muhammad NaveedDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore 54590, Pakistan.ORCID 0000-0002-4333-8226
Syeda Izma MakhdoomDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore 54590, Pakistan.
Urooj AliDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore 54590, Pakistan.ORCID 0000-0002-6640-752X
Khizra JabeenDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore 54590, Pakistan.
Tariq AzizSchool of Food & Biological Engineering, Jiangsu University, Zhenjiang 212013, China.
Ayaz Ali KhanDepartment of Biotechnology, University of Malakand, Chakdara 18800, Pakistan.ORCID 0000-0002-9274-2620
Sumbal JamilRehman Medical Institute, Peshawar 25000, Pakistan.
Muhammad ShahzadSchool of Biological Sciences, Health and Life Sciences Building, University of Reading, Reading RG6 6AX, UK.ORCID 0000-0001-6565-1777
Metab AlharbiDepartment of Pharmacology and Toxicology, College of Pharmacy, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia.
Abdulrahman AlshammariDepartment of Pharmacology and Toxicology, College of Pharmacy, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia.
University of Central Punjab · PKKing Saud University · SAJiangsu University · CNQuaid-i-Azam University · PKUniversity of Malakand · PKUniversity of Reading · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The family members of Arenaviridae include members of the genus Machupo virus, which have bi-segmented negative sense RNA inside the envelope and can be transferred to humans through rodent carriers. Machupo virus, a member of the mammarenavirus genus, causes Bolivian hemorrhage fever, its viral nucleocapsid protein being a significant virulence factor. Currently, no treatment is available for Bolivian hemorrhage fever and work to develop a protective as well as post-diagnosis treatment is underway. Adding to these efforts, this study employed a reverse-vaccinology approach to design a vaccine with B and T-cell epitopes of the viral nucleocapsid protein of the Machupo virus. Five B-cell specific, eight MHC-I restricted, and 14 MHC-II restricted epitopes were finalized for the construct based on an antigenicity score of >0.5 and non-allergenicity as a key characteristic. The poly-histidine tag was used to construct an immunogenic and stable vaccine construct and 50S ribosomal 46 protein L7/L12 adjuvant with linkers (EAAAK, GPGPG, and AYY). It covers 99.99% of the world’s population, making it highly efficient. The physicochemical properties like the aliphatic index (118.31) and the GRAVY index (0.302) showed that the vaccine is easily soluble. The overall Ramachandran score of the construct was 90.7%, and the instability index was 35.13, endorsing a stable structure. The immune simulations demonstrated a long-lasting antibody response even after the excretion of the antigen from the body in the first 5 days of injection. The IgM + IgG titers were predicted to rise to 6000 10 days post-injection and were illustrated to be stable (around 3000) after a month, elucidating that the vaccine would be effective and provide enduring protection. Lastly, the molecular interaction between the construct and the IKBKE receptor was significant and a higher eigenfactor value in MD simulations confirmed the stable molecular interaction between the receptor and the vaccine, validating our construct.

Indexed as

B and T-cell epitopesBolivian hemorrhage feverMachupo viruspotential vaccine

Identifiers

PMID36298597
PMCPMC9609340
OpenAlexW4306672927

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.