Evidence map›Paper›PMID 36298113›Full record

ArticleSensors (Basel, Switzerland)2022

Rolling Circle Enhanced Detection of Specific Restriction Endonuclease Activities in Crude Cell Extracts.

Kamilla Vandsø Petersen, Cinzia Tesauro, Marianne Smedegaard Hede, Camilla Pages, Lærke Bay Marcussen, Josephine Geertsen Keller, Magnus Bugge, Kasper Holm, Lotte Bjergbæk, Magnus Stougaard and 2 more

Open access · goldAbstract read
In one paragraph

Article in Sensors (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Kamilla Vandsø PetersenDepartment of Clinical Medicine, Aarhus University, 8000 Aarhus, Denmark.
Cinzia TesauroVPCIR Biosciences Aps, 8000 Aarhus, Denmark.ORCID 0000-0003-2986-9618
Marianne Smedegaard HedeVPCIR Biosciences Aps, 8000 Aarhus, Denmark.
Camilla PagesDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark.
Lærke Bay MarcussenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark.
Josephine Geertsen KellerDepartment of Clinical Medicine, Aarhus University, 8000 Aarhus, Denmark.ORCID 0000-0003-0567-3653
Magnus BuggeDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark.
Kasper HolmDepartment of Pathology, Aarhus University Hospital, 8000 Aarhus, Denmark.
Lotte BjergbækDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark.
Magnus StougaardDepartment of Clinical Medicine, Aarhus University, 8000 Aarhus, Denmark.
Christian WejseDepartment of Clinical Medicine, Aarhus University, 8000 Aarhus, Denmark.ORCID 0000-0002-2534-2942
Birgitta R KnudsenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus, Denmark.
Aarhus University · DKAarhus University Hospital · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Restriction endonucleases are expressed in all bacteria investigated so far and play an essential role for the bacterial defense against viral infections. Besides their important biological role, restriction endonucleases are of great use for different biotechnological purposes and are indispensable for many cloning and sequencing procedures. Methods for specific detection of restriction endonuclease activities can therefore find broad use for many purposes. In the current study, we demonstrate proof-of-concept for a new principle for the detection of restriction endonuclease activities. The method is based on rolling circle amplification of circular DNA products that can only be formed upon restriction digestion of specially designed DNA substrates. By combining the activity of the target restriction endonuclease with the highly specific Cre recombinase to generate DNA circles, we demonstrate specific detection of selected restriction endonuclease activities even in crude cell extracts. This is, to our knowledge, the first example of a sensor system that allows activity measurements of restriction endonucleases in crude samples. The presented sensor system may prove valuable for future characterization of bacteria species or strains based on their expression of restriction endonucleases as well as for quantification of restriction endonuclease activities directly in extracts from recombinant cells.

Indexed as

DNADNA, CircularCell ExtractsDNA Restriction EnzymesEndonucleasesCell ExtractsDNADNA, CircularDNA Restriction EnzymesEndonucleasesbacteriaenzyme activity detectionrestriction endonucleasesrolling circle amplification

Identifiers

PMID36298113
PMCPMC9608553
OpenAlexW4306160392

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.