Evidence map›Paper›PMID 36297267›Full record

ArticlePathogens (Basel, Switzerland)2022

High Rates of Detection and Molecular Characterization of Porcine Adenovirus Serotype 5 (

Kerry Gainor, Yussaira Castillo Fortuna, Angeline Steny Alakkaparambil, Wendy González, Yashpal Singh Malik, Souvik Ghosh

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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  4. Article
  5. Detection and Complete Genomic Analysis ofPathogens (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Kerry GainorDepartment of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre P.O. Box 334, St. Kitts and Nevis, West Indies.
Yussaira Castillo FortunaDepartment of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre P.O. Box 334, St. Kitts and Nevis, West Indies.
Angeline Steny AlakkaparambilDepartment of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre P.O. Box 334, St. Kitts and Nevis, West Indies.
Wendy GonzálezEpidemiological Surveillance Division, Dirección General de Ganadería, Santo Domingo 10410, Dominican Republic.
Yashpal Singh MalikCollege of Animal Biotechnology, Guru Angad Dev Veterinary and Animal Science University, Ludhiana 141012, India.ORCID 0000-0002-2832-4854
Souvik GhoshDepartment of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre P.O. Box 334, St. Kitts and Nevis, West Indies.ORCID 0000-0001-7581-1033
Ross University School of Veterinary Medicine · KNGuru Angad Dev Veterinary and Animal Sciences University · INUniversidad Autónoma de Santo Domingo · DO

Funding

Ross University School of Veterinary Medicine Viruses 41001-21
6 · The paper itself

Abstract

Since the first report on isolation of porcine adenovirus serotype 5 (PAdV-5, species Porcine mastadenovirus C (PAdV-C)) from pigs with respiratory illness in Japan in 1987, PAdV-5 have been detected in a few fecal samples from healthy pigs and in some environmental samples. To date, only a single PAdV-5 strain (isolate HNF-70 from 1987) has been analyzed for the complete genome. We report here high detection rates of PAdV-5 (25.74%, 26/101 fecal samples) in diarrheic pigs at 3 different farms in the Caribbean country of Dominican Republic. After a long gap, the complete deduced amino acid sequences of the DNA-dependent DNA polymerase (pol) and hexon of two PAdV-5 strains (GES7 and Z11) were determined, revealing >99% sequence identities between PAdV-5 strains (HNF-70, GES7 and Z11) detected in different parts of the world and during different time periods (1987, and 2020−2021). By phylogenetic analysis, the putative hexon and pol of HNF-70, GES7 and Z11 exhibited similar clustering patterns, with the PAdV-5 strains forming a tight cluster near ruminant AdVs, distinct from the species PAdV-A and -B. GES7 and Z11 retained the various conserved features present in the putative pol and major late promoter region of HNF-70. Considering the paucity of data on current epidemiological status and genetic diversity of PAdV in porcine populations, our findings warrant similar studies on PAdV-5 and other PAdVs in clinically ill and healthy pigs. To our knowledge, this is the first report on detection and molecular characterization of PAdV-5 (PAdV-C) from diarrheic pigs.

Indexed as

diarrheaDNA-dependent DNA polymerase (pol)hexonpigsporcine adenovirus serotype 5Porcine mastadenovirus C

Identifiers

PMID36297267
PMCPMC9610507
OpenAlexW4306936741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.