Evidence map›Paper›PMID 36297209›Full record

ArticlePathogens (Basel, Switzerland)2022

A Deletion Encompassing the Furin Cleavage Site in the Spike Encoding Gene Does Not Alter SARS-CoV-2 Replication in Lung Tissues of Mink and Neutralization by Convalescent Human Serum Samples.

Fabrizia Valleriani, Lucija Jurisic, Chiara Di Pancrazio, Roberta Irelli, Eugenia Ciarrocchi, Michele Martino, Antonio Cocco, Elisabetta Di Felice, Maria Loredana Colaianni, Nicola Decaro and 3 more

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Fabrizia VallerianiIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.ORCID 0000-0002-8049-6282
Lucija JurisicIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.
Chiara Di PancrazioIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.ORCID 0000-0002-2694-2835
Roberta IrelliIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.
Eugenia CiarrocchiIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.
Michele MartinoIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.
Antonio CoccoIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.
Elisabetta Di FeliceIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.ORCID 0000-0002-8320-6340
Maria Loredana ColaianniIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata, 71121 Foggia, Italy.
Nicola DecaroDepartment of Veterinary Medicine, University of Bari, 70010 Bari, Italy.ORCID 0000-0001-6348-7969
Barbara BonfiniIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.
Alessio LorussoIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.ORCID 0000-0001-6156-8212
Giovanni Di TeodoroIstituto Zooprofilattico Sperimentale dell'Abruzzo e Molise, 64100 Teramo, Italy.ORCID 0000-0002-9595-782X
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale · ITIstituto Zooprofilattico Sperimentale della Puglia e della Basilicata · ITUniversity of Bari Aldo Moro · ITUniversity of Teramo · IT

Funding

European Union 773830Italian Ministry of Health MSRCTE0520Italian Ministry of Health PRC2020101 STRATEGIC
6 · The paper itself

Abstract

SARS-CoV-2 has been shown to lose the furin polybasic cleavage site (FCS) following adaptation on cell culture. Deletion occurring in this region, which may include also the FCS flanking regions, seem not to affect virus replication in vitro; however, a chimeric SARS-CoV-2 virus without the sole FCS motif has been associated with lower virulence in mice and lower neutralization values. Moreover, SARS-CoV-2 virus lacking the FCS was shed to lower titers from experimentally infected ferrets and was not transmitted to cohoused sentinel animals, unlike wild-type virus. In this study, we investigated the replication kinetics and cellular tropism of a SARS-CoV-2 isolate carrying a 10-amino acid deletion in the spike protein spanning the FCS in lung ex vivo organ cultures of mink. Furthermore, we tested the neutralization capabilities of human convalescent SARS-CoV-2 positive serum samples against this virus. We showed that this deletion did not significantly hamper neither ex vivo replication nor neutralization activity by convalescent serum samples. This study highlights the importance of the preliminary phenotypic characterization of emerging viruses in ex vivo models and demonstrates that mink lung tissues are permissive to the replication of a mutant form of SARS-CoV-2 showing a deletion spanning the FCS. Notably, we also highlight the need for sequencing viral stocks before any infection study as large deletions may occur leading to the misinterpretation of results.

Indexed as

D614Gfurin cleavage site deletionminksneutralizationrespiratory ex vivo organ cultureSARS-CoV-2viral replication

Identifiers

PMID36297209
PMCPMC9609486
OpenAlexW4303962068

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.