Evidence map›Paper›PMID 36296716›Full record

ArticleMolecules (Basel, Switzerland)2022

Insights on Aggregation of Hen Egg-White Lysozyme from Raman Spectroscopy and MD Simulations.

Divya Chalapathi, Amrendra Kumar, Pratik Behera, Shijulal Nelson Sathi, Rajaram Swaminathan, Chandrabhas Narayana

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

6 authors.

Divya ChalapathiChemistry and Physics of Materials Unit, School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research, Bengaluru 560064, India.
Amrendra KumarDepartment of Bioscience and Bioengineering, Indian Institute of Technology-Guwahati, North Amingaon, Guwahati 781039, India.
Pratik BeheraTransdisciplinary Biology Program, Rajiv Gandhi Centre for Biotechnology, Thycaud Post, Poojapura, Thiruvananthapuram 695014, India.ORCID 0000-0001-9979-9470
Shijulal Nelson SathiTransdisciplinary Biology Program, Rajiv Gandhi Centre for Biotechnology, Thycaud Post, Poojapura, Thiruvananthapuram 695014, India.ORCID 0000-0002-3346-0383
Rajaram SwaminathanDepartment of Bioscience and Bioengineering, Indian Institute of Technology-Guwahati, North Amingaon, Guwahati 781039, India.
Chandrabhas NarayanaChemistry and Physics of Materials Unit, School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research, Bengaluru 560064, India.ORCID 0000-0001-6256-8994

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein misfolding and aggregation play a significant role in several neurodegenerative diseases. In the present work, the spontaneous aggregation of hen egg-white lysozyme (HEWL) in an alkaline pH 12.2 at an ambient temperature was studied to obtain molecular insights. The time-dependent changes in spectral peaks indicated the formation of β sheets and their effects on the backbone and amino acids during the aggregation process. Introducing iodoacetamide revealed the crucial role of intermolecular disulphide bonds amidst monomers in the aggregation process. These findings were corroborated by Molecular Dynamics (MD) simulations and protein-docking studies. MD simulations helped establish and visualize the unfolding of the proteins when exposed to an alkaline pH. Protein docking revealed a preferential dimer formation between the HEWL monomers at pH 12.2 compared with the neutral pH. The combination of Raman spectroscopy and MD simulations is a powerful tool to study protein aggregation mechanisms.

Indexed as

Molecular Dynamics SimulationMuramidaseAmino AcidsAnimalsChickensDisulfidesIodoacetamideProtein AggregatesProteinsSpectrum Analysis, RamanAmino AcidsDisulfidesIodoacetamideMuramidaseProtein AggregatesProteinsmolecular dynamicsprotein aggregationprotein–protein interactionsRaman spectroscopystructural biology

Identifiers

PMID36296716
PMCPMC9609503

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.