Evidence map›Paper›PMID 36296446›Full record

ArticleMolecules (Basel, Switzerland)2022

In Silico Approach of Glycinin and Conglycinin Chains of Soybean By-Product (Okara) Using Papain and Bromelain.

Andriati Ningrum, Dian Wahyu Wardani, Nurul Vanidia, Achmat Sarifudin, Rima Kumalasari, Riyanti Ekafitri, Dita Kristanti, Woro Setiaboma, Heli Siti Halimatul Munawaroh

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Andriati NingrumDepartment of Food and Agricultural Product Technology, Faculty of Agricultural Technology, Universitas Gadjah Mada, Flora Street No. 1, Bulaksumur, Yogyakarta 55281, Indonesia.
Dian Wahyu WardaniDepartment of Food and Agricultural Product Technology, Faculty of Agricultural Technology, Universitas Gadjah Mada, Flora Street No. 1, Bulaksumur, Yogyakarta 55281, Indonesia.ORCID 0000-0002-4450-5516
Nurul VanidiaDepartment of Food and Agricultural Product Technology, Faculty of Agricultural Technology, Universitas Gadjah Mada, Flora Street No. 1, Bulaksumur, Yogyakarta 55281, Indonesia.
Achmat SarifudinResearch Centre for Appropriate Technology, National Research and Innovation Agency, KS. Tubun Street No.5, Subang 41213, Indonesia.ORCID 0000-0002-9964-517X
Rima KumalasariResearch Centre for Appropriate Technology, National Research and Innovation Agency, KS. Tubun Street No.5, Subang 41213, Indonesia.
Riyanti EkafitriResearch Centre for Appropriate Technology, National Research and Innovation Agency, KS. Tubun Street No.5, Subang 41213, Indonesia.
Dita KristantiResearch Center for Food Technology and Processing, National Research and Innovation Agency, Jogja-Wonosari Street km 31,5 Playen, Gunungkidul, Yogyakarta 55861, Indonesia.ORCID 0000-0002-2862-3395
Woro SetiabomaResearch Center for Food Technology and Processing, National Research and Innovation Agency, Jogja-Wonosari Street km 31,5 Playen, Gunungkidul, Yogyakarta 55861, Indonesia.
Heli Siti Halimatul MunawarohStudy Program of Chemistry, Department of Chemistry Education, Faculty of Mathematics and Science Education, Universitas Pendidikan Indonesia, Bandung 40154, Indonesia.
National Center for Appropriate Technology · USUniversitas Gadjah Mada · IDUniversitas Gunung Kidul · IDIndonesia University of Education · ID

Funding

Kemendikbud Ristek 3799/UN1/DITLIT/Dit-Lit/PT.01.03/2022
6 · The paper itself

Abstract

This study explores utilization of a sustainable soybean by-product (okara) based on in silico approach. In silico approaches, as well as the BIOPEP database, PeptideRanker database, Peptide Calculator database (Pepcalc), ToxinPred database, and AllerTop database, were employed to evaluate the potential of glycinin and conglycinin derived peptides as a potential source of bioactive peptides. These major protein precursors have been found as protein in okara as a soybean by-product. Furthermore, primary structure, biological potential, and physicochemical, sensory, and allergenic characteristics of the theoretically released antioxidant peptides were predicted in this research. Glycinin and α subunits of β-conglycinin were selected as potential precursors of bioactive peptides based on in silico analysis. The most notable among these are antioxidant peptides. First, the potential of protein precursors for releasing bioactive peptides was evaluated by determining the frequency of occurrence of fragments with a given activity. Through the BIOPEP database analysis, there are several antioxidant bioactive peptides in glycinin and β and α subunits of β-conglycinin sequences. Then, an in silico proteolysis using selected enzymes (papain, bromelain) to obtain antioxidant peptides was investigated and then analyzed using PeptideRanker and Pepcalc. Allergenic analysis using the AllerTop revealed that all in silico proteolysis-derived antioxidant peptides are probably nonallergenic peptides. We also performed molecular docking against MPO (myeloperoxidases) for this peptide. Overall, the present study highlights that glycinin and β and α subunits of β-conglycinin could be promising precursors of bioactive peptides that have an antioxidant peptide for developing several applications.

Indexed as

GlobulinsGlycine maxAntigens, PlantAntioxidantsBromelainsMolecular Docking SimulationPapainPeptidesProtein PrecursorsSeed Storage ProteinsSoybean ProteinsAntigens, PlantAntioxidantsBromelainsGlobulinsglycininPapainPeptidesProtein PrecursorsSeed Storage ProteinsSoybean Proteinsantioxidantbioactive peptidesin silicookaravalorization

Identifiers

PMID36296446
PMCPMC9607286
OpenAlexW4306153498

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.