Evidence map›Paper›PMID 36296289›Full record

ArticleMicroorganisms2022

The Promises, Challenges, and Opportunities of Omics for Studying the Plant Holobiont.

Dana L Carper, Manasa R Appidi, Sameer Mudbhari, Him K Shrestha, Robert L Hettich, Paul E Abraham

Abstract read
In one paragraph

Article in Microorganisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dana L CarperBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Manasa R AppidiBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.ORCID 0000-0002-7331-0478
Sameer MudbhariBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Him K ShresthaBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.ORCID 0000-0001-9686-357X
Robert L HettichBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Paul E AbrahamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.ORCID 0000-0003-2685-9123

Funding

United States Department of Energy Center for Bioenergy InnovationUnited States Department of Energy Plant-Microbe Interfaces Science Focus AreaUnited States Department of Energy Secure Biosystems Design Science Focus Area
6 · The paper itself

Abstract

Microorganisms are critical drivers of biological processes that contribute significantly to plant sustainability and productivity. In recent years, emerging research on plant holobiont theory and microbial invasion ecology has radically transformed how we study plant-microbe interactions. Over the last few years, we have witnessed an accelerating pace of advancements and breadth of questions answered using omic technologies. Herein, we discuss how current state-of-the-art genomics, transcriptomics, proteomics, and metabolomics techniques reliably transcend the task of studying plant-microbe interactions while acknowledging existing limitations impeding our understanding of plant holobionts.

Indexed as

genomicsmetabolomicsplant holobiontplant–microbe interactionproteomicstranscriptomics

Identifiers

PMID36296289
PMCPMC9609723

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.