Evidence map›Paper›PMID 36293549›Full record

ArticleInternational journal of molecular sciences2022

Genome ARTIST_v2-An Autonomous Bioinformatics Tool for Annotation of Natural Transposons in Sequenced Genomes.

Alexandru Al Ecovoiu, Alexandru Marian Bologa, David Ioan Mihail Chifiriuc, Andrei Mihai Ciuca, Nicoleta Denisa Constantin, Iulian Constantin Ghionoiu, Iulian Cristian Ghita, Attila Cristian Ratiu

Open access · goldAbstract read
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In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Alexandru Al EcovoiuDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
Alexandru Marian BologaDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
David Ioan Mihail ChifiriucIndependent Researcher, 060101 Bucharest, Romania.
Andrei Mihai CiucaExenne Technologies SRL, 031215 Bucharest, Romania.
Nicoleta Denisa ConstantinDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
Iulian Constantin GhionoiuAccelerate Systems, London N1 7SR, UK.
Iulian Cristian GhitaDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
Attila Cristian RatiuDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
University of Bucharest · RORomanian Society of Nephrology · RO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The annotation of transposable elements (transposons) is a very dynamic field of genomics and various tools assigned to support this bioinformatics endeavor have been developed and described. Genome ARTIST v1.19 (GA_v1.19) software was conceived for mapping artificial transposons mobilized during insertional mutagenesis projects, but the new functions of GA_v2 qualify it as a tool for the mapping and annotation of natural transposons (NTs) in long reads, contigs and assembled genomes. The tabular export of mapping and annotation data for high-throughput data analysis, the generation of a list of flanking sequences around the coordinates of insertion or around the target site duplications and the computing of a consensus sequence for the flanking sequences are all key assets of GA_v2. Additionally, we developed a set of scripts that enable the user to annotate NTs, to harness annotations offered by FlyBase for

Indexed as

Computational BiologyDrosophila ProteinsAnimalsDNA Transposable ElementsDrosophila melanogasterMolecular Sequence AnnotationPeptide HydrolasesRetroelementsSequence Analysis, DNASoftwareDNA Transposable ElementsDrosophila ProteinsPeptide HydrolasesRetroelementsbioinformaticsDrosophila melanogasterGenome ARTISTgenome sequencinginsertion mappingnatural transposons

Identifiers

PMID36293549
PMCPMC9604107
OpenAlexW4307265847

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.