Evidence map›Paper›PMID 36293506›Full record

ArticleInternational journal of molecular sciences2022

Transcriptomic and Physiological Analyses Reveal Potential Genes Involved in Photoperiod-Regulated β-Carotene Accumulation Mechanisms in the Endocarp of Cucumber (

Hesbon Ochieng Obel, Chunyan Cheng, Zhen Tian, Martin Kagiki Njogu, Ji Li, Shengli Du, Qunfeng Lou, Junguo Zhou, Xiaqing Yu, Joshua Otieno Ogweno and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Hesbon Ochieng ObelState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-2722-0092
Chunyan ChengState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0001-9560-9270
Zhen TianState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Martin Kagiki NjoguDepartment of Plant Science, Chuka University, Chuka 60400, Kenya.
Ji LiState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Shengli DuState Key Laboratory of Vegetable Germplasm Innovation, Tianjin Kernel Cucumber Research Institute, Tianjin 300192, China.
Qunfeng LouState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0003-3750-5793
Junguo ZhouCollege of Horticulture and Landscape, Henan Institute of Science and Technology, Xinxiang 453003, China.
Xiaqing YuState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-4545-4781
Joshua Otieno OgwenoChina-Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing Agricultural University, Nanjing 210095, China.
Jinfeng ChenState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.ORCID 0000-0002-4690-6778
Nanjing Agricultural University · CNChuka University · KEHenan Institute of Science and Technology · CN

Funding

Jiangsu Agricultural Innovation of New Cultivars PZCZ201719Jiangsu Belt and Road innovation cooperation project BZ2019012The National Key research, and development program of China 2020YFE0202900, 2021YFD1200201The National Natural science Foundation of China 31902007, 31902006
6 · The paper itself

Abstract

The accumulation of carotenoids in plants is a key nutritional quality in many horticultural crops. Although the structural genes encoding the biosynthetic enzymes are well-characterized, little is known regarding photoperiod-mediated carotenoid accumulation in the fruits of some horticultural crops. Herein, we performed physiological and transcriptomic analyses using two cucumber genotypes, SWCC8 (XIS-orange-fleshed and photoperiod-sensitive) and CC3 (white-fleshed and photoperiod-non-sensitive), established under two photoperiod conditions (8L/16D vs. 12L/12D) at four fruit developmental stages. Day-neutral treatments significantly increased fruit β-carotene content by 42.1% compared to short day (SD) treatments in SWCC8 at 40 DAP with no significant changes in CC3. Day-neutral condition elevated sugar levels of fruits compared to short-day treatments. According to GO and KEGG analyses, the predominantly expressed genes were related to photosynthesis, carotenoid biosynthesis, plant hormone signaling, circadian rhythms, and carbohydrates. Consistent with β-carotene accumulation in SWCC8, the day-neutral condition elevated the expression of key carotenoid biosynthesis genes such as

Indexed as

CellulasesCucumis sativusbeta CaroteneCarotenoidsFruitGene Expression Regulation, PlantPentosesPhosphoric Monoester HydrolasesPhotoperiodPlant Growth RegulatorsPlant ProteinsTranscriptomeTrehalosebeta CaroteneCarotenoidsCellulasesPentosesPhosphoric Monoester HydrolasesPlant Growth RegulatorsPlant ProteinsTrehaloselight signalingphotoperiodtranscriptomicsWGCNAXishuangbanna cucumberβ-carotene

Identifiers

PMID36293506
PMCPMC9604348
OpenAlexW4307160398

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.